Query gi|254780210|ref|YP_003064623.1| hypothetical protein CLIBASIA_00475 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 57
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 14:42:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780210.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zdra1 b.85.1.1 (A:282-349) C 3.5 89 0.0065 12.4 -0.4 12 37-48 3-14 (68)
2 d2d0oa3 c.55.1.6 (A:404-606) D 2.6 1.6E+02 0.012 11.2 0.0 16 7-22 173-188 (203)
3 d1vbka2 d.308.1.1 (A:1-175) Hy 2.5 1.9E+02 0.014 10.8 0.9 12 3-14 5-16 (175)
4 d1ml4a2 c.78.1.1 (A:152-308) A 2.2 2.1E+02 0.016 10.5 1.8 33 16-48 119-151 (157)
5 d2ckca1 d.76.2.1 (A:2563-2622) 2.2 2.1E+02 0.016 10.5 0.5 16 10-25 13-28 (60)
6 d1p65a_ d.254.1.1 (A:) Arteriv 2.2 2.1E+02 0.015 10.6 0.2 10 7-16 29-38 (57)
7 d2ckaa1 d.76.2.1 (A:2028-2085) 2.1 2.3E+02 0.016 10.4 0.4 16 10-25 15-30 (58)
8 d1cmca_ a.43.1.5 (A:) Met repr 1.9 2.2E+02 0.016 10.5 -0.1 8 23-30 16-23 (104)
9 d2axth1 f.23.33.1 (H:2-65) Pho 1.8 2.5E+02 0.018 10.2 0.3 7 10-16 15-21 (64)
10 d2iafa1 d.81.2.1 (A:4-148) L-s 1.8 1.9E+02 0.014 10.7 -0.5 9 6-14 35-43 (145)
No 1
>d2zdra1 b.85.1.1 (A:282-349) Capsule biosynthesis protein SiaC, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=3.54 E-value=89 Score=12.43 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 668888876432
Q gi|254780210|r 37 ENRKFIRRSEIS 48 (57)
Q Consensus 37 enrkfirrseis 48 (57)
.+|+|.|||-..
T Consensus 3 ~~r~~~rrSiva 14 (68)
T d2zdra1 3 PTKDFAFASVVA 14 (68)
T ss_dssp HHHHHHSCEEEE
T ss_pred HHHHHHHEEEEE
T ss_conf 775442144899
No 2
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Probab=2.57 E-value=1.6e+02 Score=11.17 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCCCCH
Q ss_conf 1432222111210441
Q gi|254780210|r 7 GSLSDHGKVAGEEAPR 22 (57)
Q Consensus 7 gslsdhgkvageeapr 22 (57)
+-....|.+-|.|.||
T Consensus 173 ~iVaGrgNIrG~eGPR 188 (203)
T d2d0oa3 173 RLVAGRGNIRGSEGPR 188 (203)
T ss_dssp SCEEEECCGGGTSTTS
T ss_pred CEEEECCCCCCCCCCH
T ss_conf 5244315534666726
No 3
>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.53 E-value=1.9e+02 Score=10.77 Aligned_cols=12 Identities=33% Similarity=0.900 Sum_probs=8.1
Q ss_pred CEEECCCCCCCC
Q ss_conf 023014322221
Q gi|254780210|r 3 LVRYGSLSDHGK 14 (57)
Q Consensus 3 lvrygslsdhgk 14 (57)
|+|||-+.--|+
T Consensus 5 lvrygEi~lKgk 16 (175)
T d1vbka2 5 IVRYGEIGTKSR 16 (175)
T ss_dssp EEEECCTTCCCS
T ss_pred EEEEEEEEECCC
T ss_conf 999534753188
No 4
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=2.22 E-value=2.1e+02 Score=10.54 Aligned_cols=33 Identities=12% Similarity=-0.063 Sum_probs=19.9
Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 121044122216122788315668888876432
Q gi|254780210|r 16 AGEEAPRKKSEQPKREPQPQQENRKFIRRSEIS 48 (57)
Q Consensus 16 ageeaprkkseqpkrepqpqqenrkfirrseis 48 (57)
.|+|....--+-|+---..|-|||-|+|.+-+.
T Consensus 119 Rg~EI~~~V~d~p~S~v~~QaeNg~~vrmAvL~ 151 (157)
T d1ml4a2 119 RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLA 151 (157)
T ss_dssp CSSSBCGGGGGSTTBCHHHHHHTHHHHHHHHHH
T ss_pred CCCEECCCCCCCCCCHHHHHHHHCHHHHHHHHH
T ss_conf 576315011577545999999848999999999
No 5
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.22 E-value=2.1e+02 Score=10.54 Aligned_cols=16 Identities=38% Similarity=0.773 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCHHHH
Q ss_conf 2222111210441222
Q gi|254780210|r 10 SDHGKVAGEEAPRKKS 25 (57)
Q Consensus 10 sdhgkvageeaprkks 25 (57)
++--+++|++||..+.
T Consensus 13 ~tGk~L~G~~AP~~~~ 28 (60)
T d2ckca1 13 EDGTRLVGEDAPKNKD 28 (60)
T ss_dssp TTTEEECTTSSCBHHH
T ss_pred CCCCEECCCCCCCHHH
T ss_conf 8887804767867779
No 6
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=2.20 E-value=2.1e+02 Score=10.62 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q ss_conf 1432222111
Q gi|254780210|r 7 GSLSDHGKVA 16 (57)
Q Consensus 7 gslsdhgkva 16 (57)
.+|||-||+.
T Consensus 29 ~~Ls~SG~i~ 38 (57)
T d1p65a_ 29 CTLSDSGRIS 38 (57)
T ss_dssp EEECTTSCEE
T ss_pred EEEECCCCEE
T ss_conf 8883389543
No 7
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.07 E-value=2.3e+02 Score=10.42 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCHHHH
Q ss_conf 2222111210441222
Q gi|254780210|r 10 SDHGKVAGEEAPRKKS 25 (57)
Q Consensus 10 sdhgkvageeaprkks 25 (57)
.+--+++|+.||..+.
T Consensus 15 ~tGk~L~G~~AP~~~~ 30 (58)
T d2ckaa1 15 VDGTLLVGEDAPRRAE 30 (58)
T ss_dssp TTCCEECTTSSCBHHH
T ss_pred CCCCCCCCCCCCCHHH
T ss_conf 8877835567967779
No 8
>d1cmca_ a.43.1.5 (A:) Met repressor, MetJ (MetR) {Escherichia coli [TaxId: 562]}
Probab=1.88 E-value=2.2e+02 Score=10.52 Aligned_cols=8 Identities=75% Similarity=0.792 Sum_probs=0.0
Q ss_pred HHHHCCCC
Q ss_conf 22216122
Q gi|254780210|r 23 KKSEQPKR 30 (57)
Q Consensus 23 kkseqpkr 30 (57)
|||||-|.
T Consensus 16 kKseqVKK 23 (104)
T d1cmca_ 16 KKSEQVKK 23 (104)
T ss_dssp TEECCEEE
T ss_pred HHHHHHHE
T ss_conf 03444503
No 9
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.82 E-value=2.5e+02 Score=10.20 Aligned_cols=7 Identities=71% Similarity=0.871 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 2222111
Q gi|254780210|r 10 SDHGKVA 16 (57)
Q Consensus 10 sdhgkva 16 (57)
|..||||
T Consensus 15 SeyGKVa 21 (64)
T d2axth1 15 SEYGKVA 21 (64)
T ss_dssp TCSSCCC
T ss_pred CCCCCCC
T ss_conf 5457425
No 10
>d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=1.78 E-value=1.9e+02 Score=10.74 Aligned_cols=9 Identities=67% Similarity=1.006 Sum_probs=0.0
Q ss_pred ECCCCCCCC
Q ss_conf 014322221
Q gi|254780210|r 6 YGSLSDHGK 14 (57)
Q Consensus 6 ygslsdhgk 14 (57)
||||+--||
T Consensus 35 yGSLa~TG~ 43 (145)
T d2iafa1 35 YGSLALTGK 43 (145)
T ss_dssp EHHHHHTCT
T ss_pred EHHHHHCCC
T ss_conf 633342188
Done!