RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780210|ref|YP_003064623.1| hypothetical protein
CLIBASIA_00475 [Candidatus Liberibacter asiaticus str. psy62]
         (57 letters)



>gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
           Validated.
          Length = 582

 Score = 25.0 bits (55), Expect = 4.3
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 5   RYGS-----LSDHGKVAGEEAPRKKSEQPKREPQPQQENRKFIRRSEISTRTHSLSDH 57
           R GS     L   G+VAGE+A  + +      P  +          ++  R  +L + 
Sbjct: 390 RLGSNSLAELVVFGRVAGEQAAERAATAG---PGNEAALDAQAA--DVEQRLKALVNQ 442


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.308    0.124    0.342 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 844,813
Number of extensions: 34475
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 7
Length of query: 57
Length of database: 5,994,473
Length adjustment: 29
Effective length of query: 28
Effective length of database: 5,367,841
Effective search space: 150299548
Effective search space used: 150299548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.5 bits)