BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780210|ref|YP_003064623.1| hypothetical protein
CLIBASIA_00475 [Candidatus Liberibacter asiaticus str. psy62]
         (57 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780210|ref|YP_003064623.1| hypothetical protein CLIBASIA_00475 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 57

 Score =  117 bits (292), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/57 (100%), Positives = 57/57 (100%)

Query: 1  MSLVRYGSLSDHGKVAGEEAPRKKSEQPKREPQPQQENRKFIRRSEISTRTHSLSDH 57
          MSLVRYGSLSDHGKVAGEEAPRKKSEQPKREPQPQQENRKFIRRSEISTRTHSLSDH
Sbjct: 1  MSLVRYGSLSDHGKVAGEEAPRKKSEQPKREPQPQQENRKFIRRSEISTRTHSLSDH 57


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 22.3 bits (46), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 16  AGEEAPRKKSE-QPKREPQPQQENRKF 41
           A  +A  +KS+  P   P PQ ENR F
Sbjct: 349 ALYDANDQKSDISPIDSPHPQDENRYF 375


>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 682

 Score = 20.4 bits (41), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 21  PRKKSEQPKREPQPQQENRKF 41
            R+ S + KREP P++  +K 
Sbjct: 536 ARRMSNKIKREPTPEEIAKKL 556


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.308    0.124    0.342 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,979
Number of Sequences: 1233
Number of extensions: 863
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 57
length of database: 328,796
effective HSP length: 29
effective length of query: 28
effective length of database: 293,039
effective search space:  8205092
effective search space used:  8205092
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 31 (16.5 bits)