Query gi|254780211|ref|YP_003064624.1| hypothetical protein CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 14:53:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780211.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1agg_A Omega-AGA-IVB, omega-a 14.7 39 0.0012 16.7 -0.1 19 37-55 6-24 (48)
2 >3bo9_A Putative nitroalkan di 11.5 46 0.0014 16.3 -0.5 26 24-49 1-26 (78)
3 >2de6_D Ferredoxin component o 6.1 1.5E+02 0.0043 13.9 0.2 14 17-30 8-21 (37)
4 >2h0a_A TTHA0807, transcriptio 5.0 1.6E+02 0.0046 13.8 -0.2 25 1-26 109-139 (142)
5 >1iyc_A Scarabaecin; antifunga 4.7 2.1E+02 0.0062 13.2 0.2 18 13-30 6-23 (36)
6 >1n13_A PVLARGDC, pyruvoyl-dep 4.5 1.1E+02 0.0031 14.6 -1.4 15 24-38 5-19 (52)
7 >2etj_A Ribonuclease HII, RNAs 4.0 2.3E+02 0.0069 13.0 0.0 14 19-32 13-26 (79)
8 >2a7o_A Huntingtin interacting 3.8 2.3E+02 0.0067 13.0 -0.2 22 32-54 25-46 (112)
9 >2r6f_A Excinuclease ABC subun 3.6 2.6E+02 0.0078 12.7 0.1 13 21-33 21-33 (120)
10 >2fgy_A Carboxysome shell poly 3.6 2.2E+02 0.0066 13.0 -0.3 8 29-36 87-94 (245)
No 1
>>1agg_A Omega-AGA-IVB, omega-agatoxin-IVB; neurotoxin, P-type calcium channel antagonist; NMR {Agelenopsis aperta} (A:)
Probab=14.70 E-value=39 Score=16.68 Aligned_cols=19 Identities=37% Similarity=0.803 Sum_probs=15.6
Q ss_pred HHHHHCCHHHHHHHHHCCC
Q ss_conf 4013112010334530358
Q gi|254780211|r 37 IKQYTNTAFGKSKCKRGRG 55 (56)
Q Consensus 37 ikqytntafgkskckrgrg 55 (56)
.+.|-.-.+|-.+|-|||+
T Consensus 6 a~dyg~c~wggt~ccrgr~ 24 (48)
T 1agg_A 6 AEDYGKCTWGGTKCCRGRP 24 (48)
T ss_dssp CCSSCBCCSSSCCBTTTBC
T ss_pred HHHCCCCCCCCCCCCCCCC
T ss_conf 1013524038964218997
No 2
>>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} (A:213-290)
Probab=11.46 E-value=46 Score=16.35 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=19.9
Q ss_pred CCCHHHHEEEHHHHHHHHCCHHHHHH
Q ss_conf 68534520001124013112010334
Q gi|254780211|r 24 ECPIHRYFKIAVFIKQYTNTAFGKSK 49 (56)
Q Consensus 24 ecpihryfkiavfikqytntafgksk 49 (56)
||++|.-||-++.--..+.|..-++.
T Consensus 1 Es~~h~~~K~~l~~a~~~dTv~t~~~ 26 (78)
T 3bo9_A 1 ESDVHPVYKEKIVKASIRDTVVTGAK 26 (78)
T ss_dssp SCCSCHHHHHHHHHCCTTCEEEECTT
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 55677778999875103575421221
No 3
>>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* (D:50-86)
Probab=6.14 E-value=1.5e+02 Score=13.94 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=10.3
Q ss_pred EEEEECCCCCHHHH
Q ss_conf 20011256853452
Q gi|254780211|r 17 VVVRERTECPIHRY 30 (56)
Q Consensus 17 vvvrertecpihry 30 (56)
.+...+-+||.|..
T Consensus 8 ~l~~~~v~CP~H~a 21 (37)
T 2de6_D 8 TLDGDVIECPFHGG 21 (37)
T ss_dssp EEETTEEECTTTCC
T ss_pred CCCCCEEECCCCCC
T ss_conf 36899994545688
No 4
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-98,A:233-276)
Probab=5.02 E-value=1.6e+02 Score=13.80 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=13.1
Q ss_pred CCCCCCCCHH-----H-EEEEEEEEEECCCCC
Q ss_conf 9400013011-----2-112112001125685
Q gi|254780211|r 1 MIFSQIEGEL-----F-LKTALVVVRERTECP 26 (56)
Q Consensus 1 mifsqiegel-----f-lktalvvvrertecp 26 (56)
|++.+|||.- + +-+ -.|+|+-|.||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~l~~r~s~~~~ 139 (142)
T 2h0a_A 109 LLLERMRGYQGPPREVRFEP-VLVERASTGTP 139 (142)
T ss_dssp HHHHHHTTCCSSCCEEEECC-EEECCTTTCCC
T ss_pred HHHHHHCCCCCCCEEEEECC-EEEEECCCCCC
T ss_conf 99999649999984999855-99984785889
No 5
>>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} (A:)
Probab=4.67 E-value=2.1e+02 Score=13.17 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=12.5
Q ss_pred EEEEEEEEECCCCCHHHH
Q ss_conf 121120011256853452
Q gi|254780211|r 13 KTALVVVRERTECPIHRY 30 (56)
Q Consensus 13 ktalvvvrertecpihry 30 (56)
...-|.+|.|..||-...
T Consensus 6 pddkvlirsrsncpkgkv 23 (36)
T 1iyc_A 6 PDDKVLIRSRSNCPKGKV 23 (36)
T ss_dssp CSSSCCCTTTSCCCSSCE
T ss_pred CCCEEEEEECCCCCCCCE
T ss_conf 877078862168987641
No 6
>>1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} (A:)
Probab=4.45 E-value=1.1e+02 Score=14.60 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=9.9
Q ss_pred CCCHHHHEEEHHHHH
Q ss_conf 685345200011240
Q gi|254780211|r 24 ECPIHRYFKIAVFIK 38 (56)
Q Consensus 24 ecpihryfkiavfik 38 (56)
-.|||.||+..--+.
T Consensus 5 i~~ih~~~~~Pkk~~ 19 (52)
T 1n13_A 5 INPLHAYFKLPNTVS 19 (52)
T ss_dssp --CCSCCCCCCCEEE
T ss_pred CCCCCCCCCCCCEEE
T ss_conf 353226534896799
No 7
>>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structural genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} (A:172-250)
Probab=4.00 E-value=2.3e+02 Score=12.96 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=9.1
Q ss_pred EEECCCCCHHHHEE
Q ss_conf 01125685345200
Q gi|254780211|r 19 VRERTECPIHRYFK 32 (56)
Q Consensus 19 vrertecpihryfk 32 (56)
.++.--||+||.--
T Consensus 13 L~~~Gptp~HR~SF 26 (79)
T 2etj_A 13 IRKNGVLPIHRLSF 26 (79)
T ss_dssp HHHHCCCTTBCTTS
T ss_pred HHHHCCCCCCCCCC
T ss_conf 99878093223894
No 8
>>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens} (A:)
Probab=3.76 E-value=2.3e+02 Score=13.03 Aligned_cols=22 Identities=41% Similarity=0.755 Sum_probs=10.4
Q ss_pred EEHHHHHHHHCCHHHHHHHHHCC
Q ss_conf 00112401311201033453035
Q gi|254780211|r 32 KIAVFIKQYTNTAFGKSKCKRGR 54 (56)
Q Consensus 32 kiavfikqytntafgkskckrgr 54 (56)
+|+-+|-+.-| +|-|..||-||
T Consensus 25 eis~~Vv~~Ln-pYRK~~Ck~GR 46 (112)
T 2a7o_A 25 EMSQFIVQCLN-PYRKPDCKVGR 46 (112)
T ss_dssp HHHHHHHHHHT-TTSSTTCSSSB
T ss_pred HHHHHHHHHCC-CCCCCCCCCCC
T ss_conf 99999999747-51357653375
No 9
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:116-143,A:431-522)
Probab=3.65 E-value=2.6e+02 Score=12.71 Aligned_cols=13 Identities=46% Similarity=0.710 Sum_probs=9.1
Q ss_pred ECCCCCHHHHEEE
Q ss_conf 1256853452000
Q gi|254780211|r 21 ERTECPIHRYFKI 33 (56)
Q Consensus 21 ertecpihryfki 33 (56)
.|.-||.|+|-.-
T Consensus 21 ~~~~~~~~~l~Pt 33 (120)
T 2r6f_A 21 GRPICPTHRLKKE 33 (120)
T ss_dssp CEEBCTTTCBCTT
T ss_pred CCCCCCCCCCHHH
T ss_conf 8635899914699
No 10
>>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase, lyase; 2.20A {Halothiobacillus neapolitanus} (A:176-420)
Probab=3.60 E-value=2.2e+02 Score=13.05 Aligned_cols=8 Identities=75% Similarity=1.356 Sum_probs=0.0
Q ss_pred HHEEEHHH
Q ss_conf 52000112
Q gi|254780211|r 29 RYFKIAVF 36 (56)
Q Consensus 29 ryfkiavf 36 (56)
||.||+|+
T Consensus 87 rYLKiavY 94 (245)
T 2fgy_A 87 RYLKIAVY 94 (245)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
T ss_conf 43789998
Done!