Query gi|254780211|ref|YP_003064624.1| hypothetical protein CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 14:52:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780211.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1agg_A Omega-AGA-IVB, omega-ag 15.3 26 0.0011 16.8 -0.1 19 37-55 6-24 (48)
2 2oq2_A Phosphoadenosine phosph 8.8 60 0.0025 15.1 0.0 19 21-39 241-259 (261)
3 1n13_A PVLARGDC, pyruvoyl-depe 7.1 42 0.0018 15.8 -1.4 14 24-37 5-18 (52)
4 1iyc_A Scarabaecin; antifungal 4.7 1.5E+02 0.0062 13.2 0.2 18 13-30 6-23 (36)
5 1di2_A XLRBPA, double stranded 4.1 1.2E+02 0.0049 13.7 -0.6 24 26-49 29-52 (69)
6 2b7v_A Double-stranded RNA-spe 4.0 1.6E+02 0.0069 13.0 0.0 27 24-50 25-52 (71)
7 1n2m_A PVLARGDC, pyruvoyl-depe 4.0 1.5E+02 0.0061 13.2 -0.2 10 25-34 6-15 (165)
8 3dms_A Isocitrate dehydrogenas 3.9 2.6E+02 0.011 12.0 1.1 14 13-26 156-169 (427)
9 2a7o_A Huntingtin interacting 3.7 1.6E+02 0.0067 13.0 -0.3 18 24-41 79-96 (112)
10 2b7t_A Double-stranded RNA-spe 3.7 1.5E+02 0.0063 13.2 -0.4 25 26-50 31-55 (73)
No 1
>1agg_A Omega-AGA-IVB, omega-agatoxin-IVB; neurotoxin, P-type calcium channel antagonist; NMR {Agelenopsis aperta} SCOP: g.3.6.2 PDB: 1oma_A 1omb_A 1iva_A 1oav_A 1oaw_A
Probab=15.26 E-value=26 Score=16.80 Aligned_cols=19 Identities=37% Similarity=0.803 Sum_probs=15.6
Q ss_pred HHHHHCCHHHHHHHHHCCC
Q ss_conf 4013112010334530358
Q gi|254780211|r 37 IKQYTNTAFGKSKCKRGRG 55 (56)
Q Consensus 37 ikqytntafgkskckrgrg 55 (56)
.+.|-.-.+|-.+|-|||+
T Consensus 6 a~dyg~c~wggt~ccrgr~ 24 (48)
T 1agg_A 6 AEDYGKCTWGGTKCCRGRP 24 (48)
T ss_dssp CCSSCBCCSSSCCBTTTBC
T ss_pred HHHCCCCCCCCCCCCCCCC
T ss_conf 1013524038964218997
No 2
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=8.80 E-value=60 Score=15.08 Aligned_cols=19 Identities=47% Similarity=0.779 Sum_probs=9.8
Q ss_pred ECCCCCHHHHEEEHHHHHH
Q ss_conf 1256853452000112401
Q gi|254780211|r 21 ERTECPIHRYFKIAVFIKQ 39 (56)
Q Consensus 21 ertecpihryfkiavfikq 39 (56)
++|||-||---+-+-++||
T Consensus 241 ~k~ECGlh~~~~~~~~~~~ 259 (261)
T 2oq2_A 241 AKTECGIHEASRFAQFLKQ 259 (261)
T ss_dssp --CCCTTTCCGGGSCC---
T ss_pred CCCCCCCCCCCCHHHHHHC
T ss_conf 8765788888514677611
No 3
>1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 1mt1_A 2qqc_A 2qqd_A
Probab=7.06 E-value=42 Score=15.83 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=9.8
Q ss_pred CCCHHHHEEEHHHH
Q ss_conf 68534520001124
Q gi|254780211|r 24 ECPIHRYFKIAVFI 37 (56)
Q Consensus 24 ecpihryfkiavfi 37 (56)
-.|||-||++.--+
T Consensus 5 i~~ih~~~~~Pkk~ 18 (52)
T 1n13_A 5 INPLHAYFKLPNTV 18 (52)
T ss_dssp --CCSCCCCCCCEE
T ss_pred CCCCCCCCCCCCEE
T ss_conf 25220443589679
No 4
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=4.67 E-value=1.5e+02 Score=13.17 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=12.5
Q ss_pred EEEEEEEEECCCCCHHHH
Q ss_conf 121120011256853452
Q gi|254780211|r 13 KTALVVVRERTECPIHRY 30 (56)
Q Consensus 13 ktalvvvrertecpihry 30 (56)
...-|.+|.|..||-...
T Consensus 6 pddkvlirsrsncpkgkv 23 (36)
T 1iyc_A 6 PDDKVLIRSRSNCPKGKV 23 (36)
T ss_dssp CSSSCCCTTTSCCCSSCE
T ss_pred CCCEEEEEECCCCCCCCE
T ss_conf 877078862168987641
No 5
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=4.08 E-value=1.2e+02 Score=13.66 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.7
Q ss_pred CHHHHEEEHHHHHHHHCCHHHHHH
Q ss_conf 534520001124013112010334
Q gi|254780211|r 26 PIHRYFKIAVFIKQYTNTAFGKSK 49 (56)
Q Consensus 26 pihryfkiavfikqytntafgksk 49 (56)
+-.+.|.+.|.+.....++.|+||
T Consensus 29 ~h~~~F~~~v~v~~~~~~g~g~sK 52 (69)
T 1di2_A 29 PHKREFTITCRVETFVETGSGTSK 52 (69)
T ss_dssp GGGCEEEEEEEETTEEEEEEESSH
T ss_pred CCCCEEEEEEEEECEEEECCCCCH
T ss_conf 989779999999331765278979
No 6
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=3.95 E-value=1.6e+02 Score=12.97 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=20.3
Q ss_pred CCCH-HHHEEEHHHHHHHHCCHHHHHHH
Q ss_conf 6853-45200011240131120103345
Q gi|254780211|r 24 ECPI-HRYFKIAVFIKQYTNTAFGKSKC 50 (56)
Q Consensus 24 ecpi-hryfkiavfikqytntafgkskc 50 (56)
+-|. .+.|.+.|.|...+-++.|+||-
T Consensus 25 ~G~~h~~~F~~~v~v~~~~~~g~G~SKK 52 (71)
T 2b7v_A 25 SGESHAKSFVMSVVVDGQFFEGSGRNKK 52 (71)
T ss_dssp CCCTTTCCEEEEEECSSCEEEEEESSHH
T ss_pred ECCCCCCCEEEEEEECCEEEEECCCCHH
T ss_conf 8899997499999995799880689899
No 7
>1n2m_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase; pyruvoyl group, pyruvate, agmatine, lyase; 1.90A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 2qqd_C
Probab=3.95 E-value=1.5e+02 Score=13.20 Aligned_cols=10 Identities=50% Similarity=1.168 Sum_probs=5.6
Q ss_pred CCHHHHEEEH
Q ss_conf 8534520001
Q gi|254780211|r 25 CPIHRYFKIA 34 (56)
Q Consensus 25 cpihryfkia 34 (56)
-|||+||+|.
T Consensus 6 ~~~~~~~~vP 15 (165)
T 1n2m_A 6 NPLHAYFKLP 15 (165)
T ss_dssp -CCSCCCCCC
T ss_pred CCCCCCCCCC
T ss_conf 5353545788
No 8
>3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Probab=3.89 E-value=2.6e+02 Score=11.99 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.3
Q ss_pred EEEEEEEEECCCCC
Q ss_conf 12112001125685
Q gi|254780211|r 13 KTALVVVRERTECP 26 (56)
Q Consensus 13 ktalvvvrertecp 26 (56)
...+|+|||.||--
T Consensus 156 ~iD~vIVREntEG~ 169 (427)
T 3dms_A 156 KTNMVIFRENSEDI 169 (427)
T ss_dssp GCCEEEEEECSSGG
T ss_pred CCCEEEECCCCCCC
T ss_conf 57658972476210
No 9
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=3.70 E-value=1.6e+02 Score=13.04 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=7.4
Q ss_pred CCCHHHHEEEHHHHHHHH
Q ss_conf 685345200011240131
Q gi|254780211|r 24 ECPIHRYFKIAVFIKQYT 41 (56)
Q Consensus 24 ecpihryfkiavfikqyt 41 (56)
||+-.---|..-||+||-
T Consensus 79 ~~~esVK~KakefI~kYM 96 (112)
T 2a7o_A 79 ECNENVKHKTKEYIKKYM 96 (112)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 236035788999999999
No 10
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=3.65 E-value=1.5e+02 Score=13.15 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=18.6
Q ss_pred CHHHHEEEHHHHHHHHCCHHHHHHH
Q ss_conf 5345200011240131120103345
Q gi|254780211|r 26 PIHRYFKIAVFIKQYTNTAFGKSKC 50 (56)
Q Consensus 26 pihryfkiavfikqytntafgkskc 50 (56)
+-.+.|.+.|.|...+-++.|.||-
T Consensus 31 ~h~~~F~~~v~v~g~~~~g~G~SKK 55 (73)
T 2b7t_A 31 VHAPLFVMSVEVNGQVFEGSGPTKK 55 (73)
T ss_dssp SSSCEEEEEEESSSSEEEEEESSHH
T ss_pred CCCCEEEEEEEECCEEEECCCCCHH
T ss_conf 9897799999999998886999899
Done!