Query gi|254780211|ref|YP_003064624.1| hypothetical protein CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 15:24:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780211.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1agga_ g.3.6.2 (A:) omega-Aga 15.3 15 0.0011 16.8 -0.1 19 37-55 6-24 (48)
2 d1uhza_ d.50.1.1 (A:) staufen 5.8 38 0.0028 14.9 -0.9 26 24-49 32-58 (89)
3 d2cpna1 d.50.1.1 (A:150-225) T 5.1 55 0.004 14.1 -0.5 28 23-50 35-62 (76)
4 d1iyca_ g.31.1.2 (A:) Antifung 4.7 86 0.0062 13.2 0.2 18 13-30 6-23 (36)
5 d1wm8a_ g.3.7.2 (A:) Neurotoxi 4.2 1.2E+02 0.0084 12.5 0.6 12 23-34 4-15 (28)
6 d2dmya1 d.50.1.1 (A:8-91) Sper 4.1 55 0.004 14.1 -1.1 28 23-50 32-60 (84)
7 d2dkla1 a.5.2.1 (A:8-79) Trinu 4.0 94 0.0069 13.0 0.1 14 34-47 15-28 (72)
8 d2b7va1 d.50.1.1 (A:1-71) dsRN 3.9 96 0.007 12.9 0.0 27 24-50 25-52 (71)
9 d1di2a_ d.50.1.1 (A:) Double-s 3.6 80 0.0058 13.3 -0.6 24 26-49 29-52 (69)
10 d2f66c1 a.2.17.3 (C:142-206) V 3.2 1.3E+02 0.0095 12.3 0.2 7 36-42 43-49 (65)
No 1
>d1agga_ g.3.6.2 (A:) omega-Agatoxin IV, IVa, IVb {Funnel web spider (Agelenopsis aperta) [TaxId: 6908]}
Probab=15.26 E-value=15 Score=16.80 Aligned_cols=19 Identities=37% Similarity=0.803 Sum_probs=15.6
Q ss_pred HHHHHCCHHHHHHHHHCCC
Q ss_conf 4013112010334530358
Q gi|254780211|r 37 IKQYTNTAFGKSKCKRGRG 55 (56)
Q Consensus 37 ikqytntafgkskckrgrg 55 (56)
.+.|-.-.+|-.+|-|||+
T Consensus 6 a~dyg~c~wggt~ccrgr~ 24 (48)
T d1agga_ 6 AEDYGKCTWGGTKCCRGRP 24 (48)
T ss_dssp CCSSCBCCSSSCCBTTTBC
T ss_pred HHHCCCCCCCCCCCCCCCC
T ss_conf 1013524038964218997
No 2
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.80 E-value=38 Score=14.87 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=20.0
Q ss_pred CCCH-HHHEEEHHHHHHHHCCHHHHHH
Q ss_conf 6853-4520001124013112010334
Q gi|254780211|r 24 ECPI-HRYFKIAVFIKQYTNTAFGKSK 49 (56)
Q Consensus 24 ecpi-hryfkiavfikqytntafgksk 49 (56)
+-|- .+.|.+.|++....-++.|+||
T Consensus 32 ~g~~h~~~F~~~v~v~~~~~~g~g~SK 58 (89)
T d1uhza_ 32 RGMPRRREFVMQVKVGNEVATGTGPNK 58 (89)
T ss_dssp ESCSTTCEEEEEEEETTEEEEEEESSH
T ss_pred CCCCCCEEEEEEEEEEEEECCCCCHHH
T ss_conf 456775069999999656402320378
No 3
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.11 E-value=55 Score=14.09 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=20.8
Q ss_pred CCCCHHHHEEEHHHHHHHHCCHHHHHHH
Q ss_conf 5685345200011240131120103345
Q gi|254780211|r 23 TECPIHRYFKIAVFIKQYTNTAFGKSKC 50 (56)
Q Consensus 23 tecpihryfkiavfikqytntafgkskc 50 (56)
..-+..+.|.+.|.+..+..++.|+||=
T Consensus 35 ~g~~h~~~F~~~v~v~~~~~~g~G~SKK 62 (76)
T d2cpna1 35 SGPAHRKEFTMTCRVERFIEIGSGTSKK 62 (76)
T ss_dssp ECCSSSCEEEEEEEETTEEEEEEESSHH
T ss_pred ECCCCCCCEEEEEEECCEEECCCCCCHH
T ss_conf 3267775279999954224113645299
No 4
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=4.67 E-value=86 Score=13.17 Aligned_cols=18 Identities=28% Similarity=0.639 Sum_probs=12.5
Q ss_pred EEEEEEEEECCCCCHHHH
Q ss_conf 121120011256853452
Q gi|254780211|r 13 KTALVVVRERTECPIHRY 30 (56)
Q Consensus 13 ktalvvvrertecpihry 30 (56)
...-|.+|.|..||-...
T Consensus 6 pddkvlirsrsncpkgkv 23 (36)
T d1iyca_ 6 PDDKVLIRSRSNCPKGKV 23 (36)
T ss_dssp CSSSCCCTTTSCCCSSCE
T ss_pred CCCEEEEEECCCCCCCCE
T ss_conf 877078862168987641
No 5
>d1wm8a_ g.3.7.2 (A:) Neurotoxin bmp03 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}
Probab=4.15 E-value=1.2e+02 Score=12.55 Aligned_cols=12 Identities=50% Similarity=0.678 Sum_probs=8.2
Q ss_pred CCCCHHHHEEEH
Q ss_conf 568534520001
Q gi|254780211|r 23 TECPIHRYFKIA 34 (56)
Q Consensus 23 tecpihryfkia 34 (56)
.|||.|---|.|
T Consensus 4 eecp~hckgk~a 15 (28)
T d1wm8a_ 4 EECPMHCKGKNA 15 (28)
T ss_dssp SSTTGGGCSSSC
T ss_pred CCCCCCCCCCCC
T ss_conf 217000367678
No 6
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.12 E-value=55 Score=14.12 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=20.0
Q ss_pred CCCCHH-HHEEEHHHHHHHHCCHHHHHHH
Q ss_conf 568534-5200011240131120103345
Q gi|254780211|r 23 TECPIH-RYFKIAVFIKQYTNTAFGKSKC 50 (56)
Q Consensus 23 tecpih-ryfkiavfikqytntafgkskc 50 (56)
.+-|-| +.|.+.|.|...+-++.|+||-
T Consensus 32 ~~Gp~h~~~F~~~v~v~g~~~~g~G~SKK 60 (84)
T d2dmya1 32 QSGPVHAPVFTMSVDVDGTTYEASGPSKK 60 (84)
T ss_dssp EESCSSSCEEEEEEEETTEEEEEEESSHH
T ss_pred EECCCCCCEEEEEEEECCEEEECCCCCHH
T ss_conf 06898897599999999999985899989
No 7
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.03 E-value=94 Score=12.97 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=10.1
Q ss_pred HHHHHHHHCCHHHH
Q ss_conf 11240131120103
Q gi|254780211|r 34 AVFIKQYTNTAFGK 47 (56)
Q Consensus 34 avfikqytntafgk 47 (56)
.-||||++|-.|-.
T Consensus 15 np~~KQfsnMGf~r 28 (72)
T d2dkla1 15 SRLIKQLTDMGFPR 28 (72)
T ss_dssp HHHHHHHHHHTCCH
T ss_pred HHHHHHHHHCCCCC
T ss_conf 58999876368767
No 8
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.91 E-value=96 Score=12.94 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.6
Q ss_pred CCCHH-HHEEEHHHHHHHHCCHHHHHHH
Q ss_conf 68534-5200011240131120103345
Q gi|254780211|r 24 ECPIH-RYFKIAVFIKQYTNTAFGKSKC 50 (56)
Q Consensus 24 ecpih-ryfkiavfikqytntafgkskc 50 (56)
+-|.| +.|.+.|.|...+-++.|+||-
T Consensus 25 ~G~~h~~~F~~~v~v~~~~~~g~G~SKK 52 (71)
T d2b7va1 25 SGESHAKSFVMSVVVDGQFFEGSGRNKK 52 (71)
T ss_dssp CCCTTTCCEEEEEECSSCEEEEEESSHH
T ss_pred ECCCCCCEEEEEEEECCEEEEECCCCHH
T ss_conf 6899897399999999999981689889
No 9
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=3.57 E-value=80 Score=13.31 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.7
Q ss_pred CHHHHEEEHHHHHHHHCCHHHHHH
Q ss_conf 534520001124013112010334
Q gi|254780211|r 26 PIHRYFKIAVFIKQYTNTAFGKSK 49 (56)
Q Consensus 26 pihryfkiavfikqytntafgksk 49 (56)
+-.+.|.+.|.+.....++.|+||
T Consensus 29 ~h~~~F~~~v~v~~~~~~g~g~sK 52 (69)
T d1di2a_ 29 PHKREFTITCRVETFVETGSGTSK 52 (69)
T ss_dssp GGGCEEEEEEEETTEEEEEEESSH
T ss_pred CCCCCEEEEEEEEEEEEECCCCCH
T ss_conf 777416899998667876376729
No 10
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.23 E-value=1.3e+02 Score=12.28 Aligned_cols=7 Identities=57% Similarity=1.122 Sum_probs=0.0
Q ss_pred HHHHHHC
Q ss_conf 2401311
Q gi|254780211|r 36 FIKQYTN 42 (56)
Q Consensus 36 fikqytn 42 (56)
||+||-+
T Consensus 43 Fi~qYl~ 49 (65)
T d2f66c1 43 FIKNYLD 49 (65)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
Done!