RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780211|ref|YP_003064624.1| hypothetical protein CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62] (56 letters) >gnl|CDD|179579 PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional. Length = 344 Score = 26.4 bits (59), Expect = 1.8 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 13/46 (28%) Query: 17 VVVRERTECPIHRYFKIAVFIKQYT----------NTAFGKSKCKR 52 VVVRE TE P Y ++ T NTAFG + R Sbjct: 125 VVVREGTEGP---YTGNGGALRVGTPHEVATEVSVNTAFGVERVVR 167 >gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated. Length = 822 Score = 25.3 bits (56), Expect = 3.8 Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 6 IEGELFLKTALVVVRERTECPIHR 29 EGEL K A ++RE + P+ R Sbjct: 109 REGELIGKEAYHILREVCQVPVKR 132 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.329 0.141 0.420 Gapped Lambda K H 0.267 0.0659 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 860,248 Number of extensions: 35711 Number of successful extensions: 55 Number of sequences better than 10.0: 1 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 3 Length of query: 56 Length of database: 5,994,473 Length adjustment: 28 Effective length of query: 28 Effective length of database: 5,389,449 Effective search space: 150904572 Effective search space used: 150904572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.2 bits)