RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780211|ref|YP_003064624.1| hypothetical protein
CLIBASIA_00480 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition,
           DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
          Length = 236

 Score = 24.4 bits (52), Expect = 6.3
 Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 24  ECPIH-RYFKIAVFIKQYTNTAFGKSK 49
               H + F ++V +        G++K
Sbjct: 182 SGESHAKSFVMSVVVDGQFFEGSGRNK 208


>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing,
          gene regulation-RNA complex; 2.20A {Homo sapiens}
          Length = 88

 Score = 24.0 bits (52), Expect = 7.5
 Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 26 PIH-RYFKIAVFIKQYTNTAFGKSK 49
          P H + F +   ++++     G SK
Sbjct: 43 PAHRKEFTMTCRVERFIEIGSGTSK 67


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 465,973
Number of extensions: 14296
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 5,693,230
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,014,398
Effective search space: 140403144
Effective search space used: 140403144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)