HHsearch alignment for GI: 254780212 and conserved domain: PRK13703
>PRK13703 conjugal pilus assembly protein TraF; Provisional.
Probab=97.79 E-value=3.6e-05 Score=53.25 Aligned_cols=96 Identities=13% Similarity=0.142 Sum_probs=64.4
Q ss_pred EHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 28986998599996511367663112610000000001233332223444321--1112222100000000123445899
Q gi|254780212|r 24 SLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIA--SHKKFHQKHNLSITLLADESKEVLK 101 (157)
Q Consensus 24 ~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~--~~~~~~~~~~~~fpil~D~~~~~~~ 101 (157)
T Consensus 136 ~l~~la~~~GLffFy~~-~c~~c~~~apil~~fa~~y---g~~vi~VS~DG~~~p~fp~~r------------~d~Gqa~ 199 (247)
T PRK13703 136 AIAKLAEHYGLMFFYRG-QDPIDGQLAQVINGFRKTY---GLSVIPVSVDGVINPLLPDSR------------TDQGQAQ 199 (247)
T ss_pred HHHHHHHCCEEEEEECC-CCHHHHHHHHHHHHHHHHH---CCEEEEEECCCCCCCCCCCCC------------CCHHHHH
T ss_conf 99999871238999868-9804699899999999985---977999833898687778777------------7867897
Q ss_pred HCCCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCCCCCHHHHHH
Q ss_conf 85986666557665444210799988999-79999768885789999999
Q gi|254780212|r 102 SYDVWKEKSMFGKKYMGVVRTTFLIDEKG-IIAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 102 ~~gv~~~~~~~~~~~~~~~r~tfiid~~G-~I~~~~~~~~~~~~~~eil~ 150 (157)
T Consensus 200 ~l~V~------------~~PAL~Lv~p~t~~~~Pva~G~iS---~deL~~ 234 (247)
T PRK13703 200 RLGVK------------YFPALMLVDPKSGSVRPLSYGFIT---QDDLAK 234 (247)
T ss_pred HCCCC------------CCCEEEEEECCCCCEEEEEECCCC---HHHHHH
T ss_conf 36984------------165699998899928877311277---999999