HHsearch alignment for GI: 254780212 and conserved domain: PRK13703

>PRK13703 conjugal pilus assembly protein TraF; Provisional.
Probab=97.79  E-value=3.6e-05  Score=53.25  Aligned_cols=96  Identities=13%  Similarity=0.142  Sum_probs=64.4

Q ss_pred             EHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             28986998599996511367663112610000000001233332223444321--1112222100000000123445899
Q gi|254780212|r   24 SLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIA--SHKKFHQKHNLSITLLADESKEVLK  101 (157)
Q Consensus        24 ~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~--~~~~~~~~~~~~fpil~D~~~~~~~  101 (157)
T Consensus       136 ~l~~la~~~GLffFy~~-~c~~c~~~apil~~fa~~y---g~~vi~VS~DG~~~p~fp~~r------------~d~Gqa~  199 (247)
T PRK13703        136 AIAKLAEHYGLMFFYRG-QDPIDGQLAQVINGFRKTY---GLSVIPVSVDGVINPLLPDSR------------TDQGQAQ  199 (247)
T ss_pred             HHHHHHHCCEEEEEECC-CCHHHHHHHHHHHHHHHHH---CCEEEEEECCCCCCCCCCCCC------------CCHHHHH
T ss_conf             99999871238999868-9804699899999999985---977999833898687778777------------7867897


Q ss_pred             HCCCCCCCCCCCCCCCCCCEEEEEECCCC-EEEEEECCCCCCCCHHHHHH
Q ss_conf             85986666557665444210799988999-79999768885789999999
Q gi|254780212|r  102 SYDVWKEKSMFGKKYMGVVRTTFLIDEKG-IIAQIWKPVTLKNHAQSVLK  150 (157)
Q Consensus       102 ~~gv~~~~~~~~~~~~~~~r~tfiid~~G-~I~~~~~~~~~~~~~~eil~  150 (157)
T Consensus       200 ~l~V~------------~~PAL~Lv~p~t~~~~Pva~G~iS---~deL~~  234 (247)
T PRK13703        200 RLGVK------------YFPALMLVDPKSGSVRPLSYGFIT---QDDLAK  234 (247)
T ss_pred             HCCCC------------CCCEEEEEECCCCCEEEEEECCCC---HHHHHH
T ss_conf             36984------------165699998899928877311277---999999