HHsearch alignment for GI: 254780212 and conserved domain: TIGR01626
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626; InterPro: IPR006513 These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. .
Probab=96.84 E-value=0.0027 Score=41.72 Aligned_cols=139 Identities=19% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCCCCCCEEEEC----------CCCCEEEHHHHCCCEEEEEEEECCCCCCCCCCCC-CCCCC--CCCCCCCCCCCC-C
Q ss_conf 77986537307886----------9997882898699859999651136766311261-00000--000012333322-2
Q gi|254780212|r 4 LSVGDKAPHFVLPS----------NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAI-NFSSL--KADFDEESTILI-G 69 (157)
Q Consensus 4 l~vG~~aP~f~l~~----------~~g~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~-~l~~~--~~~~~~~gv~vv-~ 69 (157)
T Consensus 23 L~v~q~vP~Vgv~~~GEivL~~~~~~yq~W~SA~LaGKVRV~~hiAG-Rt--saKE~Na~li~aIkaakfp~~~YQTTTI 99 (184)
T TIGR01626 23 LEVEQSVPAVGVEERGEIVLSDDDISYQKWRSAELAGKVRVVLHIAG-RT--SAKEKNASLIEAIKAAKFPAEKYQTTTI 99 (184)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC-CC--HHHHCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf 12488589711135401675278400158741556415776565415-51--0011376189999863378767752114
Q ss_pred CCCCCCC-----CCCCCCCCC--CCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 3444321-----111222210--00000-001234458998598666655766544421079998899979999768885
Q gi|254780212|r 70 ISPDSIA-----SHKKFHQKH--NLSIT-LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 70 is~d~~~-----~~~~~~~~~--~~~fp-il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
T Consensus 100 iN~DDAI~GtgmFVkssa~~~Kke~PwSq~vlD~~g~v~nAWqL~~e~-----------SAiIVlDK~G~V~fVKeGaL~ 168 (184)
T TIGR01626 100 INADDAIVGTGMFVKSSAKKSKKEYPWSQVVLDEKGVVKNAWQLKEED-----------SAIIVLDKDGKVKFVKEGALS 168 (184)
T ss_pred EECCCCEECCCHHEECCHHCCCCCCCEEEEEECCHHHHHHHHCCCCCC-----------CEEEEECCCCCEEEEECCCCC
T ss_conf 506885006850101002107723780117886546887542145568-----------658897277735577557668
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 789999999999850
Q gi|254780212|r 142 KNHAQSVLKMVKSLK 156 (157)
Q Consensus 142 ~~~~~eil~~i~~L~ 156 (157)
T Consensus 169 ~~diQtV~~L~~~ll 183 (184)
T TIGR01626 169 EADIQTVVDLVQKLL 183 (184)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 135778999997632