HHsearch alignment for GI: 254780212 and conserved domain: TIGR02740

>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=97.69  E-value=6.7e-05  Score=51.57  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=66.0

Q ss_pred             EEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             82898699859999651136766311261000000000123333222344432111122221000000001234458998
Q gi|254780212|r   23 ISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKS  102 (157)
Q Consensus        23 ~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~  102 (157)
T Consensus       187 ~v~~~la~~~GlFFFf~S~~C~~C~~~~pil~~~~~~Y---G~~V~pvS~DG~PLp-------~G~FPn~-~pD~G~a~~  255 (306)
T TIGR02740       187 RVLKELAKKSGLFFFFKSDDCPYCHAQAPILKAFEDRY---GIEVLPVSVDGGPLP-------GGKFPNA-RPDAGQAQK  255 (306)
T ss_pred             HHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEEEECCCCCC-------CCCCCCC-CCCHHHHHH
T ss_conf             99999740751689972788662268999999999731---970899984588878-------7888885-214036754


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCE-EEEEECCCCCCCCHHHHHH
Q ss_conf             59866665576654442107999889997-9999768885789999999
Q gi|254780212|r  103 YDVWKEKSMFGKKYMGVVRTTFLIDEKGI-IAQIWKPVTLKNHAQSVLK  150 (157)
Q Consensus       103 ~gv~~~~~~~~~~~~~~~r~tfiid~~G~-I~~~~~~~~~~~~~~eil~  150 (157)
T Consensus       256 L~i---------Gtd~~VPA~~L~~p~p~~~~~igfG~~---S~~~L~~  292 (306)
T TIGR02740       256 LKI---------GTDRTVPAVFLVDPKPNQITPIGFGVM---SADELVD  292 (306)
T ss_pred             HCC---------CCCCCCCEEEEEECCCCCEEEEEECCC---CHHHHHH
T ss_conf             046---------766546658999858990368740200---3888988