HHsearch alignment for GI: 254780212 and conserved domain: TIGR02740
>TIGR02740 TraF-like TraF-like protein; InterPro: IPR014111 This entry contains TraF-like proteins that are related to the F-type conjugation system pilus assembly proteins TraF (IPR014110 from INTERPRO)and TrbB (IPR014109 from INTERPRO) both of which exhibit a thioredoxin fold . The proteins in this entry have the same length and architecture as TraF, but lack the CXXC-motif found in TrbB that is believed to be responsible for the disulphide isomerase activity..
Probab=97.69 E-value=6.7e-05 Score=51.57 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=66.0
Q ss_pred EEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 82898699859999651136766311261000000000123333222344432111122221000000001234458998
Q gi|254780212|r 23 ISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKS 102 (157)
Q Consensus 23 ~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~ 102 (157)
T Consensus 187 ~v~~~la~~~GlFFFf~S~~C~~C~~~~pil~~~~~~Y---G~~V~pvS~DG~PLp-------~G~FPn~-~pD~G~a~~ 255 (306)
T TIGR02740 187 RVLKELAKKSGLFFFFKSDDCPYCHAQAPILKAFEDRY---GIEVLPVSVDGGPLP-------GGKFPNA-RPDAGQAQK 255 (306)
T ss_pred HHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCEEEEEEECCCCCC-------CCCCCCC-CCCHHHHHH
T ss_conf 99999740751689972788662268999999999731---970899984588878-------7888885-214036754
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCE-EEEEECCCCCCCCHHHHHH
Q ss_conf 59866665576654442107999889997-9999768885789999999
Q gi|254780212|r 103 YDVWKEKSMFGKKYMGVVRTTFLIDEKGI-IAQIWKPVTLKNHAQSVLK 150 (157)
Q Consensus 103 ~gv~~~~~~~~~~~~~~~r~tfiid~~G~-I~~~~~~~~~~~~~~eil~ 150 (157)
T Consensus 256 L~i---------Gtd~~VPA~~L~~p~p~~~~~igfG~~---S~~~L~~ 292 (306)
T TIGR02740 256 LKI---------GTDRTVPAVFLVDPKPNQITPIGFGVM---SADELVD 292 (306)
T ss_pred HCC---------CCCCCCCEEEEEECCCCCEEEEEECCC---CHHHHHH
T ss_conf 046---------766546658999858990368740200---3888988