HHsearch alignment for GI: 254780212 and conserved domain: cd02948
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.72 E-value=5.3e-05 Score=52.18 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=59.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
T Consensus 16 ~~~lvvVdf~-A~WCGPCk~i~P~~~~l~~e~~~~~~~~~~~~~d~~~~----------------------~~~~~i~-- 70 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDT----------------------LKRYRGK-- 70 (102)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH----------------------HHHHCCE--
T ss_conf 7994999998-99774578878999999987478708999977998679----------------------9984988--
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999985
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSL 155 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i~~L 155 (157)
T Consensus 71 ----------s~PT-f~~fknG~~v~~~~GA----~~~~L~~~I~~l 102 (102)
T cd02948 71 ----------CEPT-FLFYKNGELVAVIRGA----NAPLLNKTITEL 102 (102)
T ss_pred ----------EEEE-EEEEECCEEEEEEECC----CHHHHHHHHHHC
T ss_conf ----------6308-9999999999999798----989999999749