HHsearch alignment for GI: 254780212 and conserved domain: cd02949

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.21  E-value=2.2e-06  Score=60.63  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r   29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE  108 (157)
Q Consensus        29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~  108 (157)
T Consensus        12 s~k~VlV~F~-A~wCgpCk~l~P~l~~la~ey~~~-v~f~kvDv---------------------d~~~~la~~~~I~~-   67 (97)
T cd02949          12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDGA-VHFVEIDI---------------------DEDQEIAEAAGIMG-   67 (97)
T ss_pred             CCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEEC---------------------CCCHHHHHHCCCCC-
T ss_conf             7994999998-999856564269999999983797-19999968---------------------87988999819931-


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             65576654442107999889997999976888578999999999
Q gi|254780212|r  109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV  152 (157)
Q Consensus       109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i  152 (157)
T Consensus        68 -----------~PT~~~f-k~g~~v~~~~G~~~~---~~l~~~i   96 (97)
T cd02949          68 -----------TPTVQFF-KDKELVKEISGVKMK---SEYREFI   96 (97)
T ss_pred             -----------CCEEEEE-ECCEEEEEEECCCCH---HHHHHHH
T ss_conf             -----------7789999-999996888888889---9999975