HHsearch alignment for GI: 254780212 and conserved domain: cd02950
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.79 E-value=8.6e-09 Score=75.44 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE 108 (157)
Q Consensus 29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~ 108 (157)
T Consensus 19 ngKPvlVdFy-A~WC~~Ck~maP~le~l~~~Y~dk-v~fv~vNVDn~~----w---------------~~~~~~y~V~g- 76 (142)
T cd02950 19 NGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDNPK----W---------------LPEIDRYRVDG- 76 (142)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCC----C---------------HHHHHHHCCCC-
T ss_conf 7997899998-998977887738999999995892-149999788870----5---------------67999819788-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 65576654442107999889997999976888578999999999
Q gi|254780212|r 109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV 152 (157)
Q Consensus 109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i 152 (157)
T Consensus 77 -----------iPt~~~fd~~G~~~~~~iG~~pe~~l~~~l~aL 109 (142)
T cd02950 77 -----------IPHFVFLDREGNEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred -----------CCEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf -----------876999868996910353769889999999999