HHsearch alignment for GI: 254780212 and conserved domain: cd02951
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.98 E-value=2.2e-05 Score=54.50 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=62.4
Q ss_pred CCEEEEEEEECCCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9859999651136766311261-0000--000001233332223444321111222210000000012344589985986
Q gi|254780212|r 30 GSKIVLYFYPKDDTSGCTAEAI-NFSS--LKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVW 106 (157)
Q Consensus 30 gk~vvl~f~~~~~tp~C~~e~~-~l~~--~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~ 106 (157)
T Consensus 14 ~Kpvlv~f~-~~~C~~C~~m~~~~~~~~~v~~~l~-~~f~~v~vd~~~~~~~~~f~g~--------~~~~~~la~~~~v~ 83 (125)
T cd02951 14 KKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKEVTDFDGE--------ALSEKELARKYRVR 83 (125)
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHCCCHHHHHHHH-CCCEEEEEECCCCCCCCCCCCC--------CCCHHHHHHHCCCC
T ss_conf 984999997-8989708999998439999999996-1814788761567530034556--------44399999986987
Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-CEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 66655766544421079998899-9799997688857899999999998
Q gi|254780212|r 107 KEKSMFGKKYMGVVRTTFLIDEK-GIIAQIWKPVTLKNHAQSVLKMVKS 154 (157)
Q Consensus 107 ~~~~~~~~~~~~~~r~tfiid~~-G~I~~~~~~~~~~~~~~eil~~i~~ 154 (157)
T Consensus 84 ~------------tPT~~fld~~gg~~i~~~~Gy~~~~~f~~~L~yv~~ 120 (125)
T cd02951 84 F------------TPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred C------------CCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 6------------777999869998677772597899999999999971