HHsearch alignment for GI: 254780212 and conserved domain: cd02956

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

Probab=98.04  E-value=5e-06  Score=58.48  Aligned_cols=85  Identities=12%  Similarity=0.237  Sum_probs=60.0

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             99859999651136766311261000000000123333222344432111122221000000001234458998598666
Q gi|254780212|r   29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKE  108 (157)
Q Consensus        29 ~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~~fpil~D~~~~~~~~~gv~~~  108 (157)
T Consensus        11 ~~~PVlv~F~-A~wC~~C~~~~p~l~~~a~~~~~~-~~~~~vd~---------------------d~~~~la~~~~V~~-   66 (96)
T cd02956          11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQGQ-FVLAKVNC---------------------DAQPQIAQQFGVQA-   66 (96)
T ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCE-EEEEEEEC---------------------CCCHHHHHHCCCCC-
T ss_conf             9980999998-899976899899999999855652-99999803---------------------34654687678761-


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf             65576654442107999889997999976888578999999999
Q gi|254780212|r  109 KSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMV  152 (157)
Q Consensus       109 ~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil~~i  152 (157)
T Consensus        67 -----------~Pt~~~f-~~G~~v~~~~G~~~~---~~l~~~l   95 (96)
T cd02956          67 -----------LPTVYLF-AAGQPVDGFQGAQPE---EQLRQML   95 (96)
T ss_pred             -----------CCEEEEE-ECCEEEEEEECCCCH---HHHHHHH
T ss_conf             -----------6838889-999994577189999---9999976