HHsearch alignment for GI: 254780212 and conserved domain: cd02967
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.83 E-value=3e-21 Score=151.96 Aligned_cols=109 Identities=24% Similarity=0.353 Sum_probs=96.2
Q ss_pred CCEEEECCCCCEEEHHHHC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 7307886999788289869-9859999651136766311261000000000123333222344432111122221000-0
Q gi|254780212|r 11 PHFVLPSNDEQEISLLALG-GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHNL-S 88 (157)
Q Consensus 11 P~f~l~~~~g~~~~l~~l~-gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~~~~~-~ 88 (157)
T Consensus 1 P~f~l~~ldG~~v~L~~~~~gk~vll~Fw-atwCP~Ck~emP~l~~~~~~~~-~~~~vv~~sdg~~~~~~~f~~~~~l~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCCEEECCCCCEEEECCCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 95374538998698055369984999997-8988678777778999999717-867999997899799999999759877
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 00001234458998598666655766544421079998899979999
Q gi|254780212|r 89 ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135 (157)
Q Consensus 89 fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~ 135 (157)
T Consensus 79 ~p~~~~~--e~~~ay~V~~------------lP~~~liD~~G~I~~k 111 (114)
T cd02967 79 FPYVLSA--ELGMAYQVSK------------LPYAVLLDEAGVIAAK 111 (114)
T ss_pred CCEEECH--HHHHHCCCCC------------EEEEEEECCCCEEEEC
T ss_conf 8798137--7875444551------------4359999899839955