HHsearch alignment for GI: 254780212 and conserved domain: cd03010
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.90 E-value=1.6e-24 Score=171.96 Aligned_cols=117 Identities=23% Similarity=0.275 Sum_probs=103.2
Q ss_pred CCCCCEEEECCCCC--EEEHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 65373078869997--882898699859999651136766311261000000000123333222344-432111122221
Q gi|254780212|r 8 DKAPHFVLPSNDEQ--EISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISP-DSIASHKKFHQK 84 (157)
Q Consensus 8 ~~aP~f~l~~~~g~--~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~-d~~~~~~~~~~~ 84 (157)
T Consensus 1 kpAP~f~l~~ldG~~~~ls~~d~kGk~vvl~FW-AtWC~pC~~e~P~l~~l~~---~~~~~vv~v~~~d~~~~~~~~~~~ 76 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALAR---QGRVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCCEECCCCCCCCEEECHHHHCCCEEEEEEE-CCCCHHHHHHCCHHHHHHH---CCCEEEEEEECCCCHHHHHHHHHH
T ss_conf 989962711778995285699929998999999-8958668886810788842---583589986347899999999998
Q ss_pred CCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCC
Q ss_conf 00000-000123445899859866665576654442107999889997999976888
Q gi|254780212|r 85 HNLSI-TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVT 140 (157)
Q Consensus 85 ~~~~f-pil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~ 140 (157)
T Consensus 77 ~~~~~~~~~~D~~~~~~~~~~v~~------------~Ptt~liD~~G~I~~~~~G~i 121 (127)
T cd03010 77 HGNPYAAVGFDPDGRVGIDLGVYG------------VPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred HCCCCCEEEECCCCCHHHHCCCCC------------CCCEEEEECCCEEEEEEECCC
T ss_conf 399864477558863223078554------------781999919997999998489