HHsearch alignment for GI: 254780212 and conserved domain: cd03013

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.86  E-value=1.1e-21  Score=154.71  Aligned_cols=143  Identities=22%  Similarity=0.315  Sum_probs=117.6

Q ss_pred             CCCCCCCEEEEC---CCCCEEEHHH-HCCCEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             986537307886---9997882898-6998599996511367663112-6100000000012333-32223444321111
Q gi|254780212|r    6 VGDKAPHFVLPS---NDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAE-AINFSSLKADFDEEST-ILIGISPDSIASHK   79 (157)
Q Consensus         6 vG~~aP~f~l~~---~~g~~~~l~~-l~gk~vvl~f~~~~~tp~C~~e-~~~l~~~~~~~~~~gv-~vv~is~d~~~~~~   79 (157)
T Consensus         1 vGd~iP~~~l~~~~~~~~~~~~l~d~f~~kkvvl~~vPgAFTp~Cs~~HlP~~i~~~~~~~~kGvd~I~~isvnD~fv~~   80 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK   80 (155)
T ss_pred             CCCCCCCCEEEEECCCCCEEEEHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
T ss_conf             98878871899762999768878998499819999824667886534658547776999997699689999809999999


Q ss_pred             CCCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC----CCHHHHHH
Q ss_conf             222210000--000012344589985986666557665444210799988999799997688857----89999999
Q gi|254780212|r   80 KFHQKHNLS--ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLK----NHAQSVLK  150 (157)
Q Consensus        80 ~~~~~~~~~--fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~----~~~~eil~  150 (157)
T Consensus        81 AW~~~~~~~~~i~~lsD~~~~f~~~lGl~~d~~~~g~-g~Rs~R~a~iv~-dg~I~~~~vE~~~~~~~vS~ae~iLk  155 (155)
T cd03013          81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGG-GIRSKRYALIVD-DGKVKYLFVEEDPGDVEVSSAENVLK  155 (155)
T ss_pred             HHHHHHCCCCCEEEEECCCHHHHHHHCCEECCCCCCC-CCCCEEEEEEEE-CCEEEEEEEECCCCCCEEECHHHHHC
T ss_conf             9999609877359954674799997298062567878-002100899999-99899999827999765568789519