HHsearch alignment for GI: 254780212 and conserved domain: cd03013
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.86 E-value=1.1e-21 Score=154.71 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=117.6
Q ss_pred CCCCCCCEEEEC---CCCCEEEHHH-HCCCEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 986537307886---9997882898-6998599996511367663112-6100000000012333-32223444321111
Q gi|254780212|r 6 VGDKAPHFVLPS---NDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAE-AINFSSLKADFDEEST-ILIGISPDSIASHK 79 (157)
Q Consensus 6 vG~~aP~f~l~~---~~g~~~~l~~-l~gk~vvl~f~~~~~tp~C~~e-~~~l~~~~~~~~~~gv-~vv~is~d~~~~~~ 79 (157)
T Consensus 1 vGd~iP~~~l~~~~~~~~~~~~l~d~f~~kkvvl~~vPgAFTp~Cs~~HlP~~i~~~~~~~~kGvd~I~~isvnD~fv~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCCCCCCEEEEECCCCCEEEEHHHHHCCCEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHCCCCEEEEEEECCHHHHH
T ss_conf 98878871899762999768878998499819999824667886534658547776999997699689999809999999
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCC----CCHHHHHH
Q ss_conf 222210000--000012344589985986666557665444210799988999799997688857----89999999
Q gi|254780212|r 80 KFHQKHNLS--ITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLK----NHAQSVLK 150 (157)
Q Consensus 80 ~~~~~~~~~--fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~----~~~~eil~ 150 (157)
T Consensus 81 AW~~~~~~~~~i~~lsD~~~~f~~~lGl~~d~~~~g~-g~Rs~R~a~iv~-dg~I~~~~vE~~~~~~~vS~ae~iLk 155 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGG-GIRSKRYALIVD-DGKVKYLFVEEDPGDVEVSSAENVLK 155 (155)
T ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHCCEECCCCCCC-CCCCEEEEEEEE-CCEEEEEEEECCCCCCEEECHHHHHC
T ss_conf 9999609877359954674799997298062567878-002100899999-99899999827999765568789519