HHsearch alignment for GI: 254780212 and conserved domain: pfam05988

>pfam05988 DUF899 Bacterial protein of unknown function (DUF899). This family consists of several uncharacterized bacterial proteins of unknown function.
Probab=98.47  E-value=4e-07  Score=65.21  Aligned_cols=130  Identities=15%  Similarity=0.279  Sum_probs=96.0

Q ss_pred             CCEEEECCCCCEEEHHHH-CCCEEEE-EEEE-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             730788699978828986-9985999-9651-----13676631126100000000012333322234443211112222
Q gi|254780212|r   11 PHFVLPSNDEQEISLLAL-GGSKIVL-YFYP-----KDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ   83 (157)
Q Consensus        11 P~f~l~~~~g~~~~l~~l-~gk~vvl-~f~~-----~~~tp~C~~e~~~l~~~~~~~~~~gv~vv~is~d~~~~~~~~~~   83 (157)
T Consensus        47 k~Y~F~gp~G~-v~L~dLF~GR~qLivYhfMf~P~~~~~C~gCS~~~D~~~g~l~hL~~rd~t~a~vsraP~~~l~~~k~  125 (211)
T pfam05988        47 KDYRFDGPDGP-VTLADLFGGRSQLIVYHFMFGPGWEAGCPGCSFLADHFDGALAHLAARDVALAAVSRAPLAELVAYKR  125 (211)
T ss_pred             CCEEEECCCCC-EEHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf             87587689985-32899809974289999702789889999722245275613778872783699993798999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHH
Q ss_conf             100000000123445899859866665576654442107999889997999976888578999999
Q gi|254780212|r   84 KHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTLKNHAQSVL  149 (157)
Q Consensus        84 ~~~~~fpil~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~~~~~~eil  149 (157)
T Consensus       126 rmGW~~pw~Ss~~s~Fn~D~~v~~~~~~-----e~pg~svF~rd-~g~Vfhtyst~--~RG~e~l~  183 (211)
T pfam05988       126 RMGWTFPWYSSVGSDFNRDFGVSFTEEG-----ERPGLSVFLRD-GGRVFHTYSTY--ARGLEDLM  183 (211)
T ss_pred             HCCCCCEEEECCCCCCCCCCCCCCCCCC-----CCCCEEEEEEC-CCEEEEEECCC--CCCCHHHH
T ss_conf             7599714786589766531475217878-----77615899976-99899965258--98730132