HHsearch alignment for GI: 254780212 and conserved domain: pfam09695
>pfam09695 YtfJ_HI0045 Bacterial protein of unknown function (YtfJ_HI0045). These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.96 E-value=2.6e-05 Score=54.06 Aligned_cols=138 Identities=19% Similarity=0.256 Sum_probs=84.0
Q ss_pred CCCCCCCCCEEEECC-----CC-----CEEEHHHHCCCEEEEEEEECCCCCCCCCCCC-CCCC-C-CCCCCCCCCCCCC-
Q ss_conf 779865373078869-----99-----7882898699859999651136766311261-0000-0-0000123333222-
Q gi|254780212|r 4 LSVGDKAPHFVLPSN-----DE-----QEISLLALGGSKIVLYFYPKDDTSGCTAEAI-NFSS-L-KADFDEESTILIG- 69 (157)
Q Consensus 4 l~vG~~aP~f~l~~~-----~g-----~~~~l~~l~gk~vvl~f~~~~~tp~C~~e~~-~l~~-~-~~~~~~~gv~vv~- 69 (157)
T Consensus 15 ~~~g~~~P~V~v~d~GEl~l~~~~~~y~~W~S~~L~GKVrviq~iAG--r~-sakelN~~l~~Aikaa~fp~~~YqtttI 91 (174)
T pfam09695 15 LQLGQPVPPVTVADKGELVLNGDKFSYQPWSSAQLAGKVRVIQHIAG--RS-SAKELNAPLIEAIKAAKFPRDKYQTTTI 91 (174)
T ss_pred CCCCCCCCCEEECCCCEEEECCCCEEEEECCHHHCCCCEEEEEEECC--CC-CHHHHHHHHHHHHHHHCCCHHHCCEEEE
T ss_conf 53589289558557855987389462212470215886899998336--88-6677738999999970798100420789
Q ss_pred CCCCCC-----CCCCCCCCCCCCCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 344432-----111122221000000---001234458998598666655766544421079998899979999768885
Q gi|254780212|r 70 ISPDSI-----ASHKKFHQKHNLSIT---LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQIWKPVTL 141 (157)
Q Consensus 70 is~d~~-----~~~~~~~~~~~~~fp---il~D~~~~~~~~~gv~~~~~~~~~~~~~~~r~tfiid~~G~I~~~~~~~~~ 141 (157)
T Consensus 92 IN~ddAiwgtg~fV~ss~e~~Kk~fP~S~~VlD~~G~v~~aW~L~~~s-----------SaIiVlDk~G~V~f~kdG~Lt 160 (174)
T pfam09695 92 INLDDAIWGTGSFVKSSAEDSKKEFPWSQFVLDSNGVVQKAWDLQEES-----------SAIIVLDKQGKVLFVKEGALT 160 (174)
T ss_pred EECCCCEECCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCCCCC-----------CEEEEECCCCCEEEEECCCCC
T ss_conf 836765322448875567651331887269991787153402689778-----------659999588878998768899
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 78999999999985
Q gi|254780212|r 142 KNHAQSVLKMVKSL 155 (157)
Q Consensus 142 ~~~~~eil~~i~~L 155 (157)
T Consensus 161 ~~ev~~vi~li~~l 174 (174)
T pfam09695 161 PAEIQQVIGLIKKL 174 (174)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998629