RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory protein [Candidatus Liberibacter asiaticus str. psy62] (157 letters) >gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed. Length = 154 Score = 147 bits (373), Expect = 1e-36 Identities = 56/154 (36%), Positives = 81/154 (52%) Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60 M L GD AP F LP D +++SL G ++++YFYPK T GCT +A + Sbjct: 1 MNPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDEL 60 Query: 61 DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120 + +++GIS D +F +K L+ TLL+DE +V + + VW EK GK Y G+ Sbjct: 61 KKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIH 120 Query: 121 RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154 R +FLID G I ++ NH VL +K Sbjct: 121 RISFLIDADGKIEHVFDKFKTSNHHDVVLDYLKE 154 >gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional. Length = 199 Score = 69.5 bits (170), Expect = 4e-13 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 22/148 (14%) Query: 4 LSVGDK-----APHF----VLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFS 54 +S GD AP F ++P+ ++ISL + G +VL+FYP D T C E I FS Sbjct: 1 MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFS 60 Query: 55 SLKADFDEESTILIGISPDSIASHKKFHQKHN-------LSITLLADESKEVLKSYDVWK 107 F+E + ++ S DS +H ++ + ++I +LAD++K + +SY V + Sbjct: 61 DSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLE 120 Query: 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQI 135 E+ G Y G+ F+ID KG++ QI Sbjct: 121 EEQ--GVAYRGL----FIIDPKGMLRQI 142 >gnl|CDD|149549 pfam08534, Redoxin, Redoxin. This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142 Score = 67.4 bits (165), Expect = 2e-12 Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 14/132 (10%) Query: 6 VGDKAPHFVLPS--NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAI---NFSSLKADF 60 GDKAP F LP D + +SL G K+VL F+P C+AE S L Sbjct: 1 AGDKAPDFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAK 60 Query: 61 DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120 + + + S D F K L +LAD K+Y E + Sbjct: 61 GVDV-VAVNASNDPFFV-MNFWAKEGLKYPVLADGDGAFTKAYG-LTEDAGLR------T 111 Query: 121 RTTFLIDEKGII 132 FLIDE G + Sbjct: 112 PRYFLIDEDGKV 123 >gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional. Length = 202 Score = 64.1 bits (156), Expect = 1e-11 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%) Query: 6 VGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEEST 65 +G KAP F + + + I L G ++L+ +P D T CT E I FS DF + Sbjct: 4 LGQKAPDFTVNTT-KGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGV 62 Query: 66 ILIGISPDSIASH----KKFHQKHNLSIT--LLADESKEVLKSYDVWKEKSMFGKKYMGV 119 L+G+S DSI SH + ++ + I ++AD KE+ + Y++ E S Sbjct: 63 ELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENS------GAT 116 Query: 120 VRTTFLIDEKGIIA-QIWKPVTLKNHAQSVLKMVKSL 155 VR F+ID I+ I+ P + ++++ K+L Sbjct: 117 VRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 >gnl|CDD|183884 PRK13189, PRK13189, peroxiredoxin; Provisional. Length = 222 Score = 62.7 bits (153), Expect = 4e-11 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 16/165 (9%) Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59 + +GDK P F + + I L G VL+ +P D T CT E + F + Sbjct: 6 IRMPLIGDKFPEFEVKTT-HGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDE 64 Query: 60 FDEESTILIGISPDSIASHKKF----HQKHNLSIT--LLADESKEVLKSYDVWKEKSMFG 113 F E +T LIG+S D + SH K+ +K + I ++AD+ E+ K M Sbjct: 65 FRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL------GMIS 118 Query: 114 -KKYMGVVRTTFLIDEKGII-AQIWKPVTLKNHAQSVLKMVKSLK 156 K VR F+ID KGII A ++ P + + +L++VK+L+ Sbjct: 119 PGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 >gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional. Length = 215 Score = 52.0 bits (124), Expect = 7e-08 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 12/135 (8%) Query: 29 GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ--KHN 86 G VL+ +P D T CT E + F+ DF E +T LIG+S D + SH K+ + K N Sbjct: 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN 86 Query: 87 LSITL----LADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTL 141 +I + +AD+ +V + + K VR F++D+KG I I + P + Sbjct: 87 TNIAIPFPVIADDLGKVSNQLGM-----IHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEV 141 Query: 142 KNHAQSVLKMVKSLK 156 + +L+ +K+L+ Sbjct: 142 GRNVDEILRALKALQ 156 >gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional. Length = 261 Score = 49.9 bits (119), Expect = 2e-07 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 14/109 (12%) Query: 34 VLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK-------HN 86 +L FYP D T C +E + FS +F+E ++G+S DS SHK + + Sbjct: 102 LLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSP 161 Query: 87 LSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135 L L +D S+EV KS+ + +++ F R + L+D+ G++ + Sbjct: 162 LKFPLFSDISREVSKSFGLLRDEG-FSH------RASVLVDKAGVVKHV 203 >gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional. Length = 215 Score = 49.8 bits (119), Expect = 3e-07 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 12/134 (8%) Query: 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ--KHNL 87 G VL+ +P D T CT E +F+ +F + +T LIG+S DS SH ++ + NL Sbjct: 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNL 92 Query: 88 SIT----LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLK 142 + ++AD V K + +S VR F++D+KG + I + P+ + Sbjct: 93 KVEVPFPIIADPMGNVAKRLGMIHAESS-----TATVRAVFIVDDKGTVRLILYYPMEIG 147 Query: 143 NHAQSVLKMVKSLK 156 + +L+ +++L+ Sbjct: 148 RNIDEILRAIRALQ 161 >gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional. Length = 173 Score = 48.8 bits (117), Expect = 5e-07 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%) Query: 2 TSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFY-----PKDDTSGCTAEAINFSSL 56 + VG +AP+FVL + ++I L L G + L F+ P C E + L Sbjct: 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKP------CEKEMPYMNEL 86 Query: 57 KADFDEESTILIGISPD-SIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKK 115 + E+ +I ++ D + + K F ++ L+ + D+ ++V+ +Y V Sbjct: 87 YPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV---------- 136 Query: 116 YMGVVRTTFLIDEKGIIAQI 135 G + TTFLID+ G + ++ Sbjct: 137 --GPLPTTFLIDKDGKVVKV 154 >gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional. Length = 200 Score = 48.5 bits (115), Expect = 7e-07 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 30 GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK----- 84 G VL+F+P D T C +E I F +F + ++G+S DS H + Sbjct: 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKG 93 Query: 85 --HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGV-VRTTFLIDEKGIIA-QIWKPVT 140 + ++AD +E+ K+Y + GV +R +FLID GI+ Q+ + Sbjct: 94 GIGPVKYAMVADVKREIQKAYGIEHPDE-------GVALRGSFLIDANGIVRHQVVNDLP 146 Query: 141 LKNHAQSVLKMVKSLK 156 L + +L+MV +L+ Sbjct: 147 LGRNIDEMLRMVDALQ 162 >gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional. Length = 167 Score = 47.2 bits (113), Expect = 2e-06 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 4 LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63 VGDKAP F L +ND ++SL G + VL +P DT C F+ A+ D Sbjct: 18 PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-- 75 Query: 64 STILIGISPDSIASHKKFHQKHNLS--ITLLADESKEVLKSYDV 105 +T+++ IS D + K+F L ITL K+Y V Sbjct: 76 NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 >gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional. Length = 187 Score = 40.0 bits (93), Expect = 3e-04 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 10/106 (9%) Query: 34 VLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHN----LSI 89 V +FYP D T C E + + + + + +S D+ +HK +H + Sbjct: 35 VFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKY 94 Query: 90 TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135 ++ D + + +++D +E R TF++D +GII I Sbjct: 95 AMIGDPTGALTRNFDNMREDEGLAD------RATFVVDPQGIIQAI 134 >gnl|CDD|163149 TIGR03137, AhpC, peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. Length = 187 Score = 37.0 bits (86), Expect = 0.002 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%) Query: 34 VLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHN----LSI 89 V +FYP D T C E + + A+ + + +S D+ HK +H ++ Sbjct: 35 VFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITY 94 Query: 90 TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGII 132 +L D + + +++ V E++ G R TF+ID +G+I Sbjct: 95 PMLGDPTGVLTRNFGVLIEEA--GLAD----RGTFVIDPEGVI 131 >gnl|CDD|131709 TIGR02661, MauD, methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. Length = 189 Score = 30.2 bits (68), Expect = 0.23 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 24/153 (15%) Query: 6 VGDKAPHFVLPSNDEQEISL---LALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62 VGD AP F LP D + + + +A G ++++ P C F +K+ Sbjct: 48 VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPS-----CPVCDKLFPIIKSIARA 102 Query: 63 ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT 122 E T ++ IS + A H++F + H L S E+ ++ V GK GV Sbjct: 103 EETDVVMISDGTPAEHRRFLKDHELG-GERYVVSAEIGMAFQV-------GKIPYGV--- 151 Query: 123 TFLIDEKGIIAQIWKPVT-LKNHAQSVLKMVKS 154 L+D+ G I K +T + H +S+L+ + Sbjct: 152 --LLDQDGKIRA--KGLTNTREHLESLLEADRE 180 >gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional. Length = 536 Score = 26.0 bits (58), Expect = 4.7 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Query: 94 DESK------EVLKSYDVWKEKSMFGKKYMGVVRTT 123 DES+ EV+ ++ W E +F Y+G+VRTT Sbjct: 422 DESRVTDSDEEVVIQHN-WHELRLFMWDYVGIVRTT 456 >gnl|CDD|177723 PLN00106, PLN00106, malate dehydrogenase. Length = 323 Score = 26.1 bits (58), Expect = 4.7 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%) Query: 98 EVLKSYDVWKEKSMFGKKYMGVVRT-TFLIDEKGI 131 EVLK V+ K +FG + VVR TF+ ++KG+ Sbjct: 147 EVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGL 181 >gnl|CDD|183467 PRK12355, PRK12355, conjugal transfer mating pair stabilization protein TraN; Reviewed. Length = 558 Score = 25.5 bits (56), Expect = 5.5 Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%) Query: 86 NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKG 130 ++TL + VW E F K G + + G Sbjct: 244 TFTLTLTMTVPDKTYTPTVVWVESCPFCKA-DGTLTGETCTEPGG 287 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 25.5 bits (56), Expect = 6.2 Identities = 8/38 (21%), Positives = 17/38 (44%) Query: 72 PDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEK 109 P+ + F QK+ + +A +E + Y W+ + Sbjct: 248 PEIVQLQYDFEQKYQTKLKDIALTEEEFVSLYKEWQHE 285 >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional. Length = 259 Score = 25.4 bits (56), Expect = 7.6 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 34 VLYFYPKDDTSGCTAEAIN 52 +L FY S CT ++IN Sbjct: 233 MLLFYASPKASYCTGQSIN 251 >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase. Length = 565 Score = 24.9 bits (54), Expect = 8.8 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 15 LPSNDEQEISLLALGGSKIVLYFYPKD 41 L S E+ I+ A GG +++ YPK+ Sbjct: 435 LQSEHERYITEEAFGGRPVIIRDYPKE 461 >gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. Length = 312 Score = 24.7 bits (54), Expect = 9.8 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 98 EVLKSYDVWKEKSMFGKKYMGVVR-TTFLIDEKG 130 EVLK V+ +FG + +VR TF+ + KG Sbjct: 128 EVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKG 161 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.315 0.131 0.370 Gapped Lambda K H 0.267 0.0684 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,418,751 Number of extensions: 138827 Number of successful extensions: 276 Number of sequences better than 10.0: 1 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 23 Length of query: 157 Length of database: 5,994,473 Length adjustment: 86 Effective length of query: 71 Effective length of database: 4,136,185 Effective search space: 293669135 Effective search space used: 293669135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (24.3 bits)