RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory
protein [Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)



>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.
          Length = 154

 Score =  147 bits (373), Expect = 1e-36
 Identities = 56/154 (36%), Positives = 81/154 (52%)

Query: 1   MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
           M  L  GD AP F LP  D +++SL    G ++++YFYPK  T GCT +A        + 
Sbjct: 1   MNPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDEL 60

Query: 61  DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
            +   +++GIS D      +F +K  L+ TLL+DE  +V + + VW EK   GK Y G+ 
Sbjct: 61  KKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIH 120

Query: 121 RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKS 154
           R +FLID  G I  ++      NH   VL  +K 
Sbjct: 121 RISFLIDADGKIEHVFDKFKTSNHHDVVLDYLKE 154


>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional.
          Length = 199

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 22/148 (14%)

Query: 4   LSVGDK-----APHF----VLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFS 54
           +S GD      AP F    ++P+   ++ISL +  G  +VL+FYP D T  C  E I FS
Sbjct: 1   MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFS 60

Query: 55  SLKADFDEESTILIGISPDSIASHKKFHQKHN-------LSITLLADESKEVLKSYDVWK 107
                F+E +  ++  S DS  +H ++  +         ++I +LAD++K + +SY V +
Sbjct: 61  DSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLE 120

Query: 108 EKSMFGKKYMGVVRTTFLIDEKGIIAQI 135
           E+   G  Y G+    F+ID KG++ QI
Sbjct: 121 EEQ--GVAYRGL----FIIDPKGMLRQI 142


>gnl|CDD|149549 pfam08534, Redoxin, Redoxin.  This family of redoxins includes
           peroxiredoxin, thioredoxin and glutaredoxin proteins.
          Length = 142

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 39/132 (29%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 6   VGDKAPHFVLPS--NDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAI---NFSSLKADF 60
            GDKAP F LP    D + +SL    G K+VL F+P      C+AE       S L    
Sbjct: 1   AGDKAPDFTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAK 60

Query: 61  DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
             +  + +  S D       F  K  L   +LAD      K+Y    E +          
Sbjct: 61  GVDV-VAVNASNDPFFV-MNFWAKEGLKYPVLADGDGAFTKAYG-LTEDAGLR------T 111

Query: 121 RTTFLIDEKGII 132
              FLIDE G +
Sbjct: 112 PRYFLIDEDGKV 123


>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional.
          Length = 202

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 14/157 (8%)

Query: 6   VGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEEST 65
           +G KAP F + +  +  I L    G  ++L+ +P D T  CT E I FS    DF +   
Sbjct: 4   LGQKAPDFTVNTT-KGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGV 62

Query: 66  ILIGISPDSIASH----KKFHQKHNLSIT--LLADESKEVLKSYDVWKEKSMFGKKYMGV 119
            L+G+S DSI SH    +   ++  + I   ++AD  KE+ + Y++  E S         
Sbjct: 63  ELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENS------GAT 116

Query: 120 VRTTFLIDEKGIIA-QIWKPVTLKNHAQSVLKMVKSL 155
           VR  F+ID   I+   I+ P     +   ++++ K+L
Sbjct: 117 VRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153


>gnl|CDD|183884 PRK13189, PRK13189, peroxiredoxin; Provisional.
          Length = 222

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 1   MTSLSVGDKAPHFVLPSNDEQEISLLA-LGGSKIVLYFYPKDDTSGCTAEAINFSSLKAD 59
           +    +GDK P F + +     I L     G   VL+ +P D T  CT E + F     +
Sbjct: 6   IRMPLIGDKFPEFEVKTT-HGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDE 64

Query: 60  FDEESTILIGISPDSIASHKKF----HQKHNLSIT--LLADESKEVLKSYDVWKEKSMFG 113
           F E +T LIG+S D + SH K+     +K  + I   ++AD+  E+ K         M  
Sbjct: 65  FRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL------GMIS 118

Query: 114 -KKYMGVVRTTFLIDEKGII-AQIWKPVTLKNHAQSVLKMVKSLK 156
             K    VR  F+ID KGII A ++ P  +  +   +L++VK+L+
Sbjct: 119 PGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163


>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional.
          Length = 215

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 12/135 (8%)

Query: 29  GGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ--KHN 86
            G   VL+ +P D T  CT E + F+    DF E +T LIG+S D + SH K+ +  K N
Sbjct: 27  AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN 86

Query: 87  LSITL----LADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTL 141
            +I +    +AD+  +V     +     +   K    VR  F++D+KG I  I + P  +
Sbjct: 87  TNIAIPFPVIADDLGKVSNQLGM-----IHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEV 141

Query: 142 KNHAQSVLKMVKSLK 156
             +   +L+ +K+L+
Sbjct: 142 GRNVDEILRALKALQ 156


>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional.
          Length = 261

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 14/109 (12%)

Query: 34  VLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK-------HN 86
           +L FYP D T  C +E + FS    +F+E    ++G+S DS  SHK + +          
Sbjct: 102 LLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSP 161

Query: 87  LSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135
           L   L +D S+EV KS+ + +++  F        R + L+D+ G++  +
Sbjct: 162 LKFPLFSDISREVSKSFGLLRDEG-FSH------RASVLVDKAGVVKHV 203


>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional.
          Length = 215

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 12/134 (8%)

Query: 30  GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQ--KHNL 87
           G   VL+ +P D T  CT E  +F+    +F + +T LIG+S DS  SH ++    + NL
Sbjct: 33  GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNL 92

Query: 88  SIT----LLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI-WKPVTLK 142
            +     ++AD    V K   +   +S         VR  F++D+KG +  I + P+ + 
Sbjct: 93  KVEVPFPIIADPMGNVAKRLGMIHAESS-----TATVRAVFIVDDKGTVRLILYYPMEIG 147

Query: 143 NHAQSVLKMVKSLK 156
            +   +L+ +++L+
Sbjct: 148 RNIDEILRAIRALQ 161


>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional.
          Length = 173

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 24/140 (17%)

Query: 2   TSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFY-----PKDDTSGCTAEAINFSSL 56
             + VG +AP+FVL   + ++I L  L G  + L F+     P      C  E    + L
Sbjct: 33  EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKP------CEKEMPYMNEL 86

Query: 57  KADFDEESTILIGISPD-SIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKK 115
              + E+   +I ++ D +  + K F  ++ L+  +  D+ ++V+ +Y V          
Sbjct: 87  YPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV---------- 136

Query: 116 YMGVVRTTFLIDEKGIIAQI 135
             G + TTFLID+ G + ++
Sbjct: 137 --GPLPTTFLIDKDGKVVKV 154


>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional.
          Length = 200

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 30  GSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQK----- 84
           G   VL+F+P D T  C +E I F     +F +    ++G+S DS   H  +        
Sbjct: 34  GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKG 93

Query: 85  --HNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGV-VRTTFLIDEKGIIA-QIWKPVT 140
               +   ++AD  +E+ K+Y +            GV +R +FLID  GI+  Q+   + 
Sbjct: 94  GIGPVKYAMVADVKREIQKAYGIEHPDE-------GVALRGSFLIDANGIVRHQVVNDLP 146

Query: 141 LKNHAQSVLKMVKSLK 156
           L  +   +L+MV +L+
Sbjct: 147 LGRNIDEMLRMVDALQ 162


>gnl|CDD|179055 PRK00522, tpx, lipid hydroperoxide peroxidase; Provisional.
          Length = 167

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 4   LSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDEE 63
             VGDKAP F L +ND  ++SL    G + VL  +P  DT  C      F+   A+ D  
Sbjct: 18  PQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-- 75

Query: 64  STILIGISPDSIASHKKFHQKHNLS--ITLLADESKEVLKSYDV 105
           +T+++ IS D   + K+F     L   ITL         K+Y V
Sbjct: 76  NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119


>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C;
           Provisional.
          Length = 187

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 34  VLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHN----LSI 89
           V +FYP D T  C  E  + +    +  +    +  +S D+  +HK +H        +  
Sbjct: 35  VFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKY 94

Query: 90  TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGIIAQI 135
            ++ D +  + +++D  +E            R TF++D +GII  I
Sbjct: 95  AMIGDPTGALTRNFDNMREDEGLAD------RATFVVDPQGIIQAI 134


>gnl|CDD|163149 TIGR03137, AhpC, peroxiredoxin.  This gene contains two invariant
           cysteine residues, one near the N-terminus and one near
           the C-terminus, each followed immediately by a proline
           residue.
          Length = 187

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 34  VLYFYPKDDTSGCTAEAINFSSLKADFDEESTILIGISPDSIASHKKFHQKHN----LSI 89
           V +FYP D T  C  E  + +   A+  +    +  +S D+   HK +H        ++ 
Sbjct: 35  VFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITY 94

Query: 90  TLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKGII 132
            +L D +  + +++ V  E++  G       R TF+ID +G+I
Sbjct: 95  PMLGDPTGVLTRNFGVLIEEA--GLAD----RGTFVIDPEGVI 131


>gnl|CDD|131709 TIGR02661, MauD, methylamine dehydrogenase accessory protein MauD. 
           This protein, MauD, appears critical to proper formation
           of the small subunit of methylamine dehydrogenase, which
           has both an unusual tryptophan tryptophylquinone
           cofactor and multiple disulfide bonds. MauD shares
           sequence similarity, including a CPxC motif, with a
           number of thiol:disulfide interchange proteins. In MauD
           mutants, the small subunit apparently does not form
           properly and is rapidly degraded.
          Length = 189

 Score = 30.2 bits (68), Expect = 0.23
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 24/153 (15%)

Query: 6   VGDKAPHFVLPSNDEQEISL---LALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADFDE 62
           VGD AP F LP  D + + +   +A G   ++++  P      C      F  +K+    
Sbjct: 48  VGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPS-----CPVCDKLFPIIKSIARA 102

Query: 63  ESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRT 122
           E T ++ IS  + A H++F + H L        S E+  ++ V       GK   GV   
Sbjct: 103 EETDVVMISDGTPAEHRRFLKDHELG-GERYVVSAEIGMAFQV-------GKIPYGV--- 151

Query: 123 TFLIDEKGIIAQIWKPVT-LKNHAQSVLKMVKS 154
             L+D+ G I    K +T  + H +S+L+  + 
Sbjct: 152 --LLDQDGKIRA--KGLTNTREHLESLLEADRE 180


>gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
          Length = 536

 Score = 26.0 bits (58), Expect = 4.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 7/36 (19%)

Query: 94  DESK------EVLKSYDVWKEKSMFGKKYMGVVRTT 123
           DES+      EV+  ++ W E  +F   Y+G+VRTT
Sbjct: 422 DESRVTDSDEEVVIQHN-WHELRLFMWDYVGIVRTT 456


>gnl|CDD|177723 PLN00106, PLN00106, malate dehydrogenase.
          Length = 323

 Score = 26.1 bits (58), Expect = 4.7
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 98  EVLKSYDVWKEKSMFGKKYMGVVRT-TFLIDEKGI 131
           EVLK   V+  K +FG   + VVR  TF+ ++KG+
Sbjct: 147 EVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGL 181


>gnl|CDD|183467 PRK12355, PRK12355, conjugal transfer mating pair stabilization
           protein TraN; Reviewed.
          Length = 558

 Score = 25.5 bits (56), Expect = 5.5
 Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 86  NLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVVRTTFLIDEKG 130
             ++TL      +      VW E   F K   G +      +  G
Sbjct: 244 TFTLTLTMTVPDKTYTPTVVWVESCPFCKA-DGTLTGETCTEPGG 287


>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 286

 Score = 25.5 bits (56), Expect = 6.2
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 72  PDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEK 109
           P+ +     F QK+   +  +A   +E +  Y  W+ +
Sbjct: 248 PEIVQLQYDFEQKYQTKLKDIALTEEEFVSLYKEWQHE 285


>gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase;
           Provisional.
          Length = 259

 Score = 25.4 bits (56), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 34  VLYFYPKDDTSGCTAEAIN 52
           +L FY     S CT ++IN
Sbjct: 233 MLLFYASPKASYCTGQSIN 251


>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
          Length = 565

 Score = 24.9 bits (54), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 15  LPSNDEQEISLLALGGSKIVLYFYPKD 41
           L S  E+ I+  A GG  +++  YPK+
Sbjct: 435 LQSEHERYITEEAFGGRPVIIRDYPKE 461


>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent.
           Although malate dehydrogenases have in some cases been
           mistaken for lactate dehydrogenases due to the
           similarity of these two substrates and the apparent ease
           with which evolution can toggle these activities,
           critical residues have been identified which can
           discriminate between the two activities. At the time of
           the creation of this model no hits above the trusted
           cutoff contained critical residues typical of lactate
           dehydrogenases.
          Length = 312

 Score = 24.7 bits (54), Expect = 9.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 98  EVLKSYDVWKEKSMFGKKYMGVVR-TTFLIDEKG 130
           EVLK   V+    +FG   + +VR  TF+ + KG
Sbjct: 128 EVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKG 161


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,418,751
Number of extensions: 138827
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 23
Length of query: 157
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,136,185
Effective search space: 293669135
Effective search space used: 293669135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)