BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory
protein [Candidatus Liberibacter asiaticus str. psy62]
(157 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780212|ref|YP_003064625.1| bacterioferritin comigratory protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 157
Score = 320 bits (820), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF
Sbjct: 1 MTSLSVGDKAPHFVLPSNDEQEISLLALGGSKIVLYFYPKDDTSGCTAEAINFSSLKADF 60
Query: 61 DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV
Sbjct: 61 DEESTILIGISPDSIASHKKFHQKHNLSITLLADESKEVLKSYDVWKEKSMFGKKYMGVV 120
Query: 121 RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ
Sbjct: 121 RTTFLIDEKGIIAQIWKPVTLKNHAQSVLKMVKSLKQ 157
>gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 80
Score = 22.7 bits (47), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 101 KSYDVWKEKS 110
+YDVWKEKS
Sbjct: 44 NAYDVWKEKS 53
>gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62]
Length = 665
Score = 22.3 bits (46), Expect = 4.1, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 19 DEQEISLLALGG-SKIV------------LYFYPKDDTSGCTAEAINFSSLKADFDEEST 65
+ QE++ ALG SK+V + F ++ CT + ++ +FD+
Sbjct: 50 NAQEVARWALGEWSKVVDLTFEETSIHSDIKFISSNNGYVCTPRYDSRYFMEINFDKADV 109
Query: 66 ILIGISPDSIASHKKFHQ 83
GI +I SH H+
Sbjct: 110 WRYGIGKGTILSHNALHE 127
>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 896
Score = 21.9 bits (45), Expect = 5.5, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 24 SLLALGGSKIVLYFYPKDDTSG 45
S+L++GG V Y PK + +G
Sbjct: 12 SILSVGGIDYVYYSLPKAEANG 33
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus
str. psy62]
Length = 1828
Score = 21.2 bits (43), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 7/14 (50%), Positives = 13/14 (92%)
Query: 139 VTLKNHAQSVLKMV 152
VTL+NH+Q++L+ +
Sbjct: 884 VTLENHSQAMLEKI 897
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,197
Number of Sequences: 1233
Number of extensions: 3719
Number of successful extensions: 11
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 157
length of database: 328,796
effective HSP length: 67
effective length of query: 90
effective length of database: 246,185
effective search space: 22156650
effective search space used: 22156650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)