Query gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 15:44:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780213.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qg3_A UPF0130 protein AF_205 27.1 48 0.0014 16.1 2.5 43 4-54 138-181 (208) 2 >2it2_A UPF0130 protein PH1069 22.2 52 0.0015 15.9 2.0 43 7-49 19-72 (97) 3 >2kdn_A Putative uncharacteriz 12.6 1.1E+02 0.0034 14.1 1.8 20 13-32 75-94 (108) 4 >1jmx_B Amine dehydrogenase; o 10.3 48 0.0014 16.1 -0.8 36 2-37 17-52 (84) 5 >1r8u_A CBP/P300-interacting t 10.2 1.5E+02 0.0044 13.5 1.8 18 38-55 3-21 (50) 6 >1yx3_A Hypothetical protein D 8.9 1.2E+02 0.0036 14.0 0.8 20 2-21 38-57 (61) 7 >1v9j_A BOLA-like protein rike 8.6 1.5E+02 0.0043 13.5 1.2 19 13-31 82-100 (113) 8 >1pby_B Quinohemoprotein amine 8.5 63 0.0019 15.5 -0.7 37 2-38 107-143 (187) 9 >2dvk_A UPF0130 protein APE081 8.2 1.8E+02 0.0054 13.0 2.9 27 28-54 139-166 (188) 10 >2wzp_P Lactococcal phage P2 O 8.0 1.5E+02 0.0043 13.5 1.0 14 4-23 48-61 (162) No 1 >>2qg3_A UPF0130 protein AF_2059; 2648472, uncharacterized protein AF2059, TYW3 like, structural genomics; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304} (A:) Probab=27.12 E-value=48 Score=16.11 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=29.4 Q ss_pred CCCCCCEEEEHHHHHHHHCCCCEEEEEECC-CCCCEECHHHHHHHHHHHHHH Q ss_conf 101000000178887742025217775405-777301599999999996232 Q gi|254780213|r 4 ITSLSKWDIEVNSILKEEIDDISVVSLPLS-DDNMTIDEEYLEKLVVESLDR 54 (63) Q Consensus 4 itslskwdievnsilkeeiddisvvslpls-ddnmtideeyleklvvesldr 54 (63) |+|.++|-+++.+-++ ...|+. ++.+-+++|||+.||-.+-++ T Consensus 138 I~s~kr~iVaIrs~~~--------le~Pl~~~g~~lV~~eyl~~Lv~~aN~k 181 (208) T 2qg3_A 138 VISLSNYVVEIASLER--------IELPVAEKGLXLVDDAYLSYVVRWANEK 181 (208) T ss_dssp EEETTTTEEEECCCCC--------EEEEEEETTEESSCHHHHHHHHHHHHHH T ss_pred EEECCCEEEEEEECCC--------EEEEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 0306826999950573--------4356603994716999999999999999 No 2 >>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A (A:57-103,A:151-200) Probab=22.19 E-value=52 Score=15.91 Aligned_cols=43 Identities=30% Similarity=0.555 Sum_probs=28.0 Q ss_pred CCCEEE-----EHHHHHHHHCCC-CEEE----EEECCCC-CCEECHHHHHHHHH Q ss_conf 000000-----178887742025-2177----7540577-73015999999999 Q gi|254780213|r 7 LSKWDI-----EVNSILKEEIDD-ISVV----SLPLSDD-NMTIDEEYLEKLVV 49 (63) Q Consensus 7 lskwdi-----evnsilkeeidd-isvv----slplsdd-nmtideeyleklvv 49 (63) |.||.- |+..-++..-++ |+.| ..||++| .+-.++||++.+|- T Consensus 19 lgkwh~y~~~~e~~~a~~~~~~~~~~fv~ERLEVPLg~dGkiLVseEYL~fLV~ 72 (97) T 2it2_A 19 LGKWHREVSLYEVLEAIKKHRSGQLWFLVERXDVLLGENGEIFVGEEYLNKIVE 72 (97) T ss_dssp EEEESSCCCHHHHHHHHTTCCSSEEEEEECCEEEEEEETTEECCCHHHHHHHHH T ss_pred EEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCCCCCHHHHHHHHH T ss_conf 234178799999999873467762799718511266219937269999999999 No 3 >>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} (A:) Probab=12.65 E-value=1.1e+02 Score=14.10 Aligned_cols=20 Identities=45% Similarity=0.619 Sum_probs=15.1 Q ss_pred EHHHHHHHHCCCCEEEEEEC Q ss_conf 17888774202521777540 Q gi|254780213|r 13 EVNSILKEEIDDISVVSLPL 32 (63) Q Consensus 13 evnsilkeeiddisvvslpl 32 (63) -||..|++++.+|--+++-. T Consensus 75 ~V~~~L~e~i~~iHAlsi~t 94 (108) T 2kdn_A 75 LVNTILKEELQNIHAFSMKC 94 (108) T ss_dssp HHHHHHHHHGGGCSCEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEE T ss_conf 99999999971241048780 No 4 >>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} (B:256-339) Probab=10.30 E-value=48 Score=16.11 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=23.9 Q ss_pred CCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 401010000001788877420252177754057773 Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNM 37 (63) Q Consensus 2 gfitslskwdievnsilkeeiddisvvslplsddnm 37 (63) |..+.|+|.|||-...+|.-.-+-+--++-.|.|.- T Consensus 17 gv~n~L~k~Die~~kllk~v~L~HTYY~v~~s~dG~ 52 (84) T 1jmx_B 17 GVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGD 52 (84) T ss_dssp EEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSS T ss_pred ECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCC T ss_conf 318989999999995999974899888999967999 No 5 >>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} (A:) Probab=10.21 E-value=1.5e+02 Score=13.49 Aligned_cols=18 Identities=61% Similarity=0.756 Sum_probs=14.7 Q ss_pred EECHHHHHHHHHH-HHHHH Q ss_conf 0159999999999-62322 Q gi|254780213|r 38 TIDEEYLEKLVVE-SLDRS 55 (63) Q Consensus 38 tideeyleklvve-sldrs 55 (63) -||||-|..|++| .|||- T Consensus 3 liDEevL~sLv~ElgldR~ 21 (50) T 1r8u_A 3 FIDEEVLMSLVIEMGLDRI 21 (50) T ss_dssp SCCHHHHHHHHHHHTGGGC T ss_pred CCCHHHHHHHHHHHHHHHH T ss_conf 1009999999999823888 No 6 >>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum} (A:1-61) Probab=8.91 E-value=1.2e+02 Score=13.99 Aligned_cols=20 Identities=20% Similarity=0.704 Sum_probs=16.2 Q ss_pred CCCCCCCCEEEEHHHHHHHH Q ss_conf 40101000000178887742 Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEE 21 (63) Q Consensus 2 gfitslskwdievnsilkee 21 (63) ||+..++.|.-++-..+.++ T Consensus 38 GYL~n~~dWseevA~~lA~~ 57 (61) T 1yx3_A 38 GYLSNLNDWVPGVADVMAKQ 57 (61) T ss_dssp TEECCTTCCCHHHHHHHHHT T ss_pred CCCCCHHHCCHHHHHHHHHH T ss_conf 66579112989999999998 No 7 >>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} (A:) Probab=8.63 E-value=1.5e+02 Score=13.55 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=11.3 Q ss_pred EHHHHHHHHCCCCEEEEEE Q ss_conf 1788877420252177754 Q gi|254780213|r 13 EVNSILKEEIDDISVVSLP 31 (63) Q Consensus 13 evnsilkeeiddisvvslp 31 (63) -||..|+++|.+|--+++- T Consensus 82 ~Vy~~L~~~i~~iHAlsik 100 (113) T 1v9j_A 82 LVNECLAEELPHIHAFEQK 100 (113) T ss_dssp HHHHHTTTTGGGCSSEEEE T ss_pred HHHHHHHHHHHCCEEEEEE T ss_conf 2899999997314204878 No 8 >>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} (B:1-33,B:184-337) Probab=8.52 E-value=63 Score=15.49 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=24.9 Q ss_pred CCCCCCCCEEEEHHHHHHHHCCCCEEEEEECCCCCCE Q ss_conf 4010100000017888774202521777540577730 Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMT 38 (63) Q Consensus 2 gfitslskwdievnsilkeeiddisvvslplsddnmt 38 (63) |..+.|+|.|||-...||.-.-+-+--++-.|.|+-. T Consensus 107 Gv~N~Lsk~Die~~kllK~v~L~HTYY~Vnvs~DGsk 143 (187) T 1pby_B 107 GAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 143 (187) T ss_dssp EEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCE T ss_pred ECCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCCE T ss_conf 7576489998988949999738998889999789999 No 9 >>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix} (A:) Probab=8.21 E-value=1.8e+02 Score=13.04 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=19.6 Q ss_pred EEEECC-CCCCEECHHHHHHHHHHHHHH Q ss_conf 775405-777301599999999996232 Q gi|254780213|r 28 VSLPLS-DDNMTIDEEYLEKLVVESLDR 54 (63) Q Consensus 28 vslpls-ddnmtideeyleklvvesldr 54 (63) ...|+. ++.+.+++|||+.||-.+-++ T Consensus 139 le~Pl~~~g~~lV~~eyl~~Lv~~aN~k 166 (188) T 2dvk_A 139 MSVPLVMEGARIVGDDALDMLIEKANTI 166 (188) T ss_dssp EEEEEEETTEECCCHHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 6667741992746999999999999999 No 10 >>2wzp_P Lactococcal phage P2 ORF15; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_S (P:165-326) Probab=8.01 E-value=1.5e+02 Score=13.55 Aligned_cols=14 Identities=71% Similarity=1.082 Sum_probs=10.3 Q ss_pred CCCCCCEEEEHHHHHHHHCC Q ss_conf 10100000017888774202 Q gi|254780213|r 4 ITSLSKWDIEVNSILKEEID 23 (63) Q Consensus 4 itslskwdievnsilkeeid 23 (63) |..||.||| |+||- T Consensus 48 i~rlsrwdi------k~eif 61 (162) T 2wzp_P 48 IDRLSRWDI------KEEIF 61 (162) T ss_dssp GGGGGCEEE------CSCEE T ss_pred HHHHHHCCH------HHHHH T ss_conf 666631114------89999 Done!