Query         gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 23 15:21:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780213.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2vxo_A GMP synthase [glutamine  25.9      41  0.0017   15.6   3.1   46    6-51    591-673 (697)
  2 2qg3_A UPF0130 protein AF_2059  21.7      49  0.0021   15.2   2.5   43    4-54    138-181 (208)
  3 1ji8_A Dissimilatory siroheme-  19.9      32  0.0013   16.2   1.3   24    2-25     22-45  (111)
  4 1r8u_A CBP/P300-interacting tr  17.8      58  0.0024   14.9   2.2   18   38-55      3-21  (50)
  5 2xa6_A KH domain-containing\,R  12.8      72   0.003   14.4   1.6   21   36-56      2-24  (41)
  6 3o2e_A BOLA-like protein; ssgc  11.2      94   0.004   13.7   1.8   20   13-32     74-93  (105)
  7 1sau_A Sulfite reductase, desu   9.1   1E+02  0.0042   13.6   1.3   22    1-22     16-37  (115)
  8 1ehx_A CIPC, scaffoldin protei   6.9 1.1E+02  0.0048   13.3   0.8   20   30-49     43-62  (94)
  9 1h2k_S Hypoxia-inducible facto   6.4      74  0.0031   14.3  -0.4   15    5-19      8-22  (41)
 10 1p4q_A CBP/P300-interacting tr   5.8 1.6E+02  0.0068   12.5   1.0   21   35-55     12-33  (52)

No 1  
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=25.89  E-value=41  Score=15.64  Aligned_cols=46  Identities=39%  Similarity=0.564  Sum_probs=33.1

Q ss_pred             CCCCEEEEHHHHHHH-----HCCCCEEEEEEC-----------------------CCCCCE---------ECHHHHHHHH
Q ss_conf             100000017888774-----202521777540-----------------------577730---------1599999999
Q gi|254780213|r    6 SLSKWDIEVNSILKE-----EIDDISVVSLPL-----------------------SDDNMT---------IDEEYLEKLV   48 (63)
Q Consensus         6 slskwdievnsilke-----eiddisvvslpl-----------------------sddnmt---------ideeyleklv   48 (63)
                      .|-..|.-+|++|.+     .|....||.+|+                       +.|-||         |.++-|++.+
T Consensus       591 ~lr~ad~~~~~~l~~~~~~~~i~Q~pvvl~p~~f~~~~~~~~~~~~~svviR~~~T~DfMT~~~a~p~~~ip~~~l~~i~  670 (697)
T 2vxo_A          591 TLRQADFEAHNILRESGYAGKISQMPVILTPLHFDRDPLQKQPSCQRSVVIRTFITSDFMTGIPATPGNEIPVEVVLKMV  670 (697)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGCSBCCEEEESCCCCCCGGGTCCCCCEEEEECCBBCSSSSSBBCCCBTTTBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             88887899999988613000210173786125457423331777751599942613302037755675548999999999


Q ss_pred             HHH
Q ss_conf             996
Q gi|254780213|r   49 VES   51 (63)
Q Consensus        49 ves   51 (63)
                      -|-
T Consensus       671 ~~i  673 (697)
T 2vxo_A          671 TEI  673 (697)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             998


No 2  
>2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304}
Probab=21.72  E-value=49  Score=15.23  Aligned_cols=43  Identities=28%  Similarity=0.516  Sum_probs=28.1

Q ss_pred             CCCCCCEEEEHHHHHHHHCCCCEEEEEECCCC-CCEECHHHHHHHHHHHHHH
Q ss_conf             10100000017888774202521777540577-7301599999999996232
Q gi|254780213|r    4 ITSLSKWDIEVNSILKEEIDDISVVSLPLSDD-NMTIDEEYLEKLVVESLDR   54 (63)
Q Consensus         4 itslskwdievnsilkeeiddisvvslplsdd-nmtideeyleklvvesldr   54 (63)
                      |+|.++|-+++.+-+        -...|+.++ .+-+++|||+.||-.+-++
T Consensus       138 I~s~~~~iVaIrs~~--------~le~Pl~~~g~~lV~~eyL~~Lv~~aNek  181 (208)
T 2qg3_A          138 VISLSNYVVEIASLE--------RIELPVAEKGLMLVDDAYLSYVVRWANEK  181 (208)
T ss_dssp             EEETTTTEEEECCCC--------CEEEEEEETTEESSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEECC--------CEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf             111783599995158--------45346731993706999999999999999


No 3  
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=19.90  E-value=32  Score=16.25  Aligned_cols=24  Identities=29%  Similarity=0.596  Sum_probs=19.6

Q ss_pred             CCCCCCCCEEEEHHHHHHHHCCCC
Q ss_conf             401010000001788877420252
Q gi|254780213|r    2 GFITSLSKWDIEVNSILKEEIDDI   25 (63)
Q Consensus         2 gfitslskwdievnsilkeeiddi   25 (63)
                      ||...++.|+-++-..+-.+.+.|
T Consensus        22 GfL~~~~dW~e~vA~~lA~~~egi   45 (111)
T 1ji8_A           22 CFMQNPEDWDEKVAEWLARELEGI   45 (111)
T ss_dssp             GEECCGGGCCHHHHHHHHHHHTCC
T ss_pred             CCCCCHHHCCHHHHHHHHHCCCCC
T ss_conf             773993446999999999730483


No 4  
>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=17.84  E-value=58  Score=14.85  Aligned_cols=18  Identities=61%  Similarity=0.756  Sum_probs=14.6

Q ss_pred             EECHHHHHHHHHH-HHHHH
Q ss_conf             0159999999999-62322
Q gi|254780213|r   38 TIDEEYLEKLVVE-SLDRS   55 (63)
Q Consensus        38 tideeyleklvve-sldrs   55 (63)
                      -||||-|..|+.| .|||-
T Consensus         3 ~iDEevL~sL~~ElgLdR~   21 (50)
T 1r8u_A            3 FIDEEVLMSLVIEMGLDRI   21 (50)
T ss_dssp             SCCHHHHHHHHHHHTGGGC
T ss_pred             CCCHHHHHHHHHHHHHHHH
T ss_conf             2009999999999823888


No 5  
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=12.82  E-value=72  Score=14.36  Aligned_cols=21  Identities=43%  Similarity=0.669  Sum_probs=15.9

Q ss_pred             CCEECHHHHHHHHHH--HHHHHC
Q ss_conf             730159999999999--623220
Q gi|254780213|r   36 NMTIDEEYLEKLVVE--SLDRSL   56 (63)
Q Consensus        36 nmtideeyleklvve--sldrsl   56 (63)
                      .|.-++.||..|..|  |||.|.
T Consensus         2 ~me~e~kyLpeLmAEkdsLDpSF   24 (41)
T 2xa6_A            2 AMEPENKYLPELMAEKDSLDPSF   24 (41)
T ss_dssp             ---CHHHHHHHHHHHHHHSCTTC
T ss_pred             CCCCCHHHHHHHHHHHCCCCHHH
T ss_conf             87720205799986331467799


No 6  
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=11.20  E-value=94  Score=13.74  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=14.4

Q ss_pred             EHHHHHHHHCCCCEEEEEEC
Q ss_conf             17888774202521777540
Q gi|254780213|r   13 EVNSILKEEIDDISVVSLPL   32 (63)
Q Consensus        13 evnsilkeeiddisvvslpl   32 (63)
                      -||.+|+++|.+|--+++-.
T Consensus        74 ~V~~~L~eei~~IHAlsikt   93 (105)
T 3o2e_A           74 LVNSAIAAEMPQIHAFTMKC   93 (105)
T ss_dssp             HHHHHTTTTGGGEEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEE
T ss_conf             99999999985031327770


No 7  
>1sau_A Sulfite reductase, desulfoviridin-type subunit gamma; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus dsm 4304} PDB: 2a5w_A
Probab=9.06  E-value=1e+02  Score=13.61  Aligned_cols=22  Identities=32%  Similarity=0.664  Sum_probs=18.6

Q ss_pred             CCCCCCCCCEEEEHHHHHHHHC
Q ss_conf             9401010000001788877420
Q gi|254780213|r    1 MGFITSLSKWDIEVNSILKEEI   22 (63)
Q Consensus         1 mgfitslskwdievnsilkeei   22 (63)
                      -||...++.|+-+|-..+.++.
T Consensus        16 ~GfL~~~~dW~e~vA~~lA~~~   37 (115)
T 1sau_A           16 DGFLQDWEEWDEEVAEALAKDT   37 (115)
T ss_dssp             TSCBSSGGGCCHHHHHHHHTCT
T ss_pred             CCCCCCHHHCCHHHHHHHHHHC
T ss_conf             8754994657999999999843


No 8  
>1ehx_A CIPC, scaffoldin protein; beta-BETA-barrels, 3.10 helix, unknown function; NMR {Clostridium cellulolyticum} SCOP: b.1.18.13
Probab=6.94  E-value=1.1e+02  Score=13.29  Aligned_cols=20  Identities=20%  Similarity=0.297  Sum_probs=15.8

Q ss_pred             EECCCCCCEECHHHHHHHHH
Q ss_conf             54057773015999999999
Q gi|254780213|r   30 LPLSDDNMTIDEEYLEKLVV   49 (63)
Q Consensus        30 lplsddnmtideeyleklvv   49 (63)
                      .-++++..||-.+||+++-.
T Consensus        43 Ytv~g~~vTik~sYL~~l~~   62 (94)
T 1ehx_A           43 YTKGTNEVTLLASYLNTLPE   62 (94)
T ss_dssp             EEEETTEEEECHHHHHHSCS
T ss_pred             EEEECCEEEEEHHHHHCCCC
T ss_conf             79858899998899600768


No 9  
>1h2k_S Hypoxia-inducible factor 1 alpha; transcription activator/inhibitor, FIH, HIF, DSBH, oxygenase, transcription, 2- oxoglutarate; HET: OGA; 2.15A {Homo sapiens} SCOP: j.96.1.1 PDB: 1h2l_S* 2ilm_S* 1l3e_A
Probab=6.39  E-value=74  Score=14.29  Aligned_cols=15  Identities=33%  Similarity=0.605  Sum_probs=10.7

Q ss_pred             CCCCCEEEEHHHHHH
Q ss_conf             010000001788877
Q gi|254780213|r    5 TSLSKWDIEVNSILK   19 (63)
Q Consensus         5 tslskwdievnsilk   19 (63)
                      ..|+.||-|||.-+.
T Consensus         8 P~lT~yDcEVNaP~~   22 (41)
T 1h2k_S            8 PQLTSYDCEVNAPIQ   22 (41)
T ss_dssp             --CCCCCCCCSSCC-
T ss_pred             CCCCCCCCEECCCCC
T ss_conf             200155405436436


No 10 
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=5.82  E-value=1.6e+02  Score=12.50  Aligned_cols=21  Identities=57%  Similarity=0.683  Sum_probs=16.1

Q ss_pred             CCCEECHHHHHHHHHH-HHHHH
Q ss_conf             7730159999999999-62322
Q gi|254780213|r   35 DNMTIDEEYLEKLVVE-SLDRS   55 (63)
Q Consensus        35 dnmtideeyleklvve-sldrs   55 (63)
                      |.--||||-|-.||+| .|||.
T Consensus        12 D~d~iDEevL~sLv~ELgLdR~   33 (52)
T 1p4q_A           12 DTDFIDEEVLMSLVIEMGLDRI   33 (52)
T ss_dssp             SCSSSCTTHHHHHHHHHTSSSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH
T ss_conf             4220169999999999823888


Done!