Query gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 18:15:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780213.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r9ja3 c.48.1.1 (A:527-669) T 23.0 11 0.00082 17.4 0.7 36 12-48 34-69 (143)
2 d1ji8a_ d.203.1.1 (A:) DsrC, t 17.6 22 0.0016 15.8 1.3 24 2-25 22-45 (111)
3 d2v4jc1 d.203.1.1 (C:3-105) Ds 6.8 87 0.0063 12.7 1.5 21 1-21 14-34 (103)
4 d1hara_ e.8.1.2 (A:) HIV-1 rev 6.4 40 0.0029 14.4 -0.5 29 1-29 151-191 (216)
5 d1ehxa_ b.1.18.13 (A:) Cellulo 6.4 74 0.0054 13.0 0.8 19 31-49 44-62 (94)
6 d1v9ja_ d.52.6.1 (A:) BolA-lik 6.2 90 0.0066 12.6 1.2 17 14-30 83-99 (113)
7 d1tlja_ d.282.1.1 (A:) Hypothe 5.9 98 0.0071 12.4 3.5 27 28-54 146-173 (189)
8 d1itza3 c.48.1.1 (A:540-675) T 5.2 1.1E+02 0.0079 12.1 1.1 38 10-47 37-74 (136)
9 d1gpua3 c.48.1.1 (A:535-680) T 4.5 1.2E+02 0.0088 11.9 0.9 38 11-48 35-72 (146)
10 d1d4ba_ d.15.2.1 (A:) Cell dea 4.1 1.3E+02 0.0096 11.7 1.2 20 28-47 73-93 (122)
No 1
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}
Probab=23.04 E-value=11 Score=17.37 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=25.6
Q ss_pred EEHHHHHHHHCCCCEEEEEECCCCCCEECHHHHHHHH
Q ss_conf 0178887742025217775405777301599999999
Q gi|254780213|r 12 IEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLV 48 (63)
Q Consensus 12 ievnsilkeeiddisvvslplsddnmtideeyleklv 48 (63)
+++-.+|+++| .+.|||+|--+.-...+++|.+.+.
T Consensus 34 leAA~~L~~~I-~~~VVS~ps~~~~~~~~~~y~~~vl 69 (143)
T d1r9ja3 34 VDAAKALSGEL-RVRVVSMPCQELFDAQPDTYRQAVL 69 (143)
T ss_dssp HHHHHHHTTTC-CEEEEECSCHHHHHTSCHHHHHHHS
T ss_pred HHHHHHHHHHC-CEEEEEEEEHHHHHHHHHHHHHHHC
T ss_conf 99999987642-5338641100345431599998747
No 2
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=17.56 E-value=22 Score=15.80 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=19.7
Q ss_pred CCCCCCCCEEEEHHHHHHHHCCCC
Q ss_conf 401010000001788877420252
Q gi|254780213|r 2 GFITSLSKWDIEVNSILKEEIDDI 25 (63)
Q Consensus 2 gfitslskwdievnsilkeeiddi 25 (63)
||...++.|+-++-..+-.+.+.|
T Consensus 22 GfL~~~~dW~e~vA~~lA~~~eGi 45 (111)
T d1ji8a_ 22 CFMQNPEDWDEKVAEWLARELEGI 45 (111)
T ss_dssp GEECCGGGCCHHHHHHHHHHHTCC
T ss_pred CCCCCHHHCCHHHHHHHHHCCCCC
T ss_conf 762994656999999999720483
No 3
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=6.77 E-value=87 Score=12.66 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.5
Q ss_pred CCCCCCCCCEEEEHHHHHHHH
Q ss_conf 940101000000178887742
Q gi|254780213|r 1 MGFITSLSKWDIEVNSILKEE 21 (63)
Q Consensus 1 mgfitslskwdievnsilkee 21 (63)
-||...++.|+-++-..+.++
T Consensus 14 ~GyL~~~~dW~e~vA~~lA~~ 34 (103)
T d2v4jc1 14 DGFLLRFDDWCPEWVEYVKES 34 (103)
T ss_dssp TSCBSCGGGCCHHHHHHHGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHH
T ss_conf 755288131989999999988
No 4
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=6.39 E-value=40 Score=14.42 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=19.4
Q ss_pred CCCCCCCCCEEEEHHHHHHHH------------CCCCEEEE
Q ss_conf 940101000000178887742------------02521777
Q gi|254780213|r 1 MGFITSLSKWDIEVNSILKEE------------IDDISVVS 29 (63)
Q Consensus 1 mgfitslskwdievnsilkee------------iddisvvs 29 (63)
||+..|-.-+.-.++.+|.+- +|||-|.|
T Consensus 151 fGl~naPa~fqr~m~~~l~~~~~~~~~~~v~~YlDDIlI~S 191 (216)
T d1hara_ 151 QGWKGSPAIFQSSMTKILAPFKAANPDIVIYQYMDDLYVGS 191 (216)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHCTTSEEEEETTEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECC
T ss_conf 76658579999999999998761488769999782389846
No 5
>d1ehxa_ b.1.18.13 (A:) Cellulosomal scaffoldin protein CipC, module x2.1 {Clostridium cellulolyticum [TaxId: 1521]}
Probab=6.38 E-value=74 Score=13.04 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.3
Q ss_pred ECCCCCCEECHHHHHHHHH
Q ss_conf 4057773015999999999
Q gi|254780213|r 31 PLSDDNMTIDEEYLEKLVV 49 (63)
Q Consensus 31 plsddnmtideeyleklvv 49 (63)
-.|.++.||-.+||.++-.
T Consensus 44 tvsg~~vTik~syLa~l~~ 62 (94)
T d1ehxa_ 44 TKGTNEVTLLASYLNTLPE 62 (94)
T ss_dssp EEETTEEEECHHHHHHSCS
T ss_pred EECCCEEEEEHHHHHCCCC
T ss_conf 8749889998899601779
No 6
>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.24 E-value=90 Score=12.57 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=8.1
Q ss_pred HHHHHHHHCCCCEEEEE
Q ss_conf 78887742025217775
Q gi|254780213|r 14 VNSILKEEIDDISVVSL 30 (63)
Q Consensus 14 vnsilkeeiddisvvsl 30 (63)
||.+|++++.+|-.+++
T Consensus 83 Vy~~L~~ei~~iHAlsi 99 (113)
T d1v9ja_ 83 VNECLAEELPHIHAFEQ 99 (113)
T ss_dssp HHHHTTTTGGGCSSEEE
T ss_pred HHHHHHHHHHCCEEEEE
T ss_conf 79999999720420487
No 7
>d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=5.89 E-value=98 Score=12.38 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEEECCC-CCCEECHHHHHHHHHHHHHH
Q ss_conf 7754057-77301599999999996232
Q gi|254780213|r 28 VSLPLSD-DNMTIDEEYLEKLVVESLDR 54 (63)
Q Consensus 28 vslplsd-dnmtideeyleklvvesldr 54 (63)
...|+.+ +.+.+++|||+.||-.+-++
T Consensus 146 le~Pl~~~~~~lV~~eyL~~lv~~aN~k 173 (189)
T d1tlja_ 146 MVHLLRESNTERVDKDKIKTLVNVCNEV 173 (189)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7765425996755999999999999999
No 8
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}
Probab=5.21 E-value=1.1e+02 Score=12.15 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=23.4
Q ss_pred EEEEHHHHHHHHCCCCEEEEEECCCCCCEECHHHHHHH
Q ss_conf 00017888774202521777540577730159999999
Q gi|254780213|r 10 WDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKL 47 (63)
Q Consensus 10 wdievnsilkeeiddisvvslplsddnmtideeylekl 47 (63)
.-++...+|+++--.+.|||.|..+.-...++.|..+.
T Consensus 37 ~al~Aa~~L~~~gi~~~Vvs~p~~~~~~~~~~~~~~~i 74 (136)
T d1itza3 37 IAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESV 74 (136)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999985123344325666315554015543101
No 9
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.46 E-value=1.2e+02 Score=11.88 Aligned_cols=38 Identities=24% Similarity=0.109 Sum_probs=23.7
Q ss_pred EEEHHHHHHHHCCCCEEEEEECCCCCCEECHHHHHHHH
Q ss_conf 00178887742025217775405777301599999999
Q gi|254780213|r 11 DIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLV 48 (63)
Q Consensus 11 dievnsilkeeiddisvvslplsddnmtideeyleklv 48 (63)
-++...+|+++--...|||+|--.--...+.+|..++.
T Consensus 35 AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~ 72 (146)
T d1gpua3 35 SVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVL 72 (146)
T ss_dssp HHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHC
T ss_conf 99999999863657657975100598865588765423
No 10
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.11 E-value=1.3e+02 Score=11.69 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=15.8
Q ss_pred EEEECCCCCCEE-CHHHHHHH
Q ss_conf 775405777301-59999999
Q gi|254780213|r 28 VSLPLSDDNMTI-DEEYLEKL 47 (63)
Q Consensus 28 vslplsddnmti-deeylekl 47 (63)
+.+-|-.|.-.+ ||||..-|
T Consensus 73 ~~lvLeeDGT~Vd~EeYFqtL 93 (122)
T d1d4ba_ 73 LTLVLEEDGTAVDSEDFFQLL 93 (122)
T ss_dssp CEEEETTTTEEECSTHHHHHS
T ss_pred EEEEEECCCCEECCHHHHHCC
T ss_conf 389994799798742676426
Done!