BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780213|ref|YP_003064626.1| hypothetical protein
CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039890|gb|ACT56686.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 63

 Score =  123 bits (309), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY 60
          MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY
Sbjct: 1  MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY 60

Query: 61 EKK 63
          EKK
Sbjct: 61 EKK 63


>gi|326480030|gb|EGE04040.1| hypothetical protein TEQG_03074 [Trichophyton equinum CBS 127.97]
          Length = 350

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 11  DIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCN 59
           +I  + IL     DI V+SLP S+DN+TI  EYL+ L+  S   S+R N
Sbjct: 168 NILYSKILSASFTDIKVLSLP-SNDNVTIQPEYLDNLISRS---SIRGN 212


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254039890|gb|ACT56686.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 63

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY 60
          MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY
Sbjct: 1  MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY 60

Query: 61 EKK 63
          EKK
Sbjct: 61 EKK 63


>gi|326480030|gb|EGE04040.1| hypothetical protein TEQG_03074 [Trichophyton equinum CBS 127.97]
          Length = 350

 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 11  DIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCN 59
           +I  + IL     DI V+SLP S+DN+TI  EYL+ L+  S   S+R N
Sbjct: 168 NILYSKILSASFTDIKVLSLP-SNDNVTIQPEYLDNLISRS---SIRGN 212


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.313    0.133    0.362 

Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,040,388,767
Number of Sequences: 13984884
Number of extensions: 29620605
Number of successful extensions: 84687
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84684
Number of HSP's gapped (non-prelim): 6
length of query: 63
length of database: 4,792,584,752
effective HSP length: 35
effective length of query: 28
effective length of database: 4,303,113,812
effective search space: 120487186736
effective search space used: 120487186736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)