RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780213|ref|YP_003064626.1| hypothetical protein
CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>gnl|CDD|146896 pfam04487, CITED, CITED.  CITED, CBP/p300-interacting
           transactivator with ED-rich tail, are characterized by a
           conserved 32-amino acid sequence at the C-terminus.
           CITED proteins do not bind DNA directly and are thought
           to function as transcriptional co-activators.
          Length = 206

 Score = 28.7 bits (64), Expect = 0.34
 Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)

Query: 39  IDEEYLEKLVVE-SLDR 54
           IDEE L  LV+E  LDR
Sbjct: 159 IDEEVLMSLVLELGLDR 175


>gnl|CDD|30461 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
           transport and metabolism].
          Length = 413

 Score = 25.1 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 27  VVSLPLSDDNMTIDEEYLEKLVVE 50
           VVS  +  +   ID + +EKL  E
Sbjct: 141 VVSYGVDPETGLIDYDEVEKLAKE 164


>gnl|CDD|32499 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production
           and conversion].
          Length = 910

 Score = 24.1 bits (52), Expect = 9.5
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 25  ISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLR 57
           +S + + L+  ++ + E Y + LV   L   L 
Sbjct: 792 LSNMEMVLAKSDLWLAEHYAQLLVDPELGERLF 824


>gnl|CDD|145953 pfam03074, GCS, Glutamate-cysteine ligase.  This family represents
           the catalytic subunit of glutamate-cysteine ligase (E.C.
           6.3.2.2), also known as gamma-glutamylcysteine
           synthetase (GCS). This enzyme catalyses the rate
           limiting step in the biosynthesis of glutathione. The
           eukaryotic enzyme is a dimer of a heavy chain and a
           light chain with all the catalytic activity exhibited by
           the heavy chain (this family).
          Length = 365

 Score = 24.0 bits (52), Expect = 9.6
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 17  ILKEEIDDISVVSLPLS-------DDNMTIDEEYLEKLVVESLDRSL 56
           I+K   D I V             D ++ I+E+  E+L+ E +D  L
Sbjct: 89  IIKSRYDSIDVYISKCKPNLEEYNDIDLPINEKIYEQLLDEGIDERL 135


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.133    0.362 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 738,638
Number of extensions: 28358
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 7
Length of query: 63
Length of database: 6,263,737
Length adjustment: 35
Effective length of query: 28
Effective length of database: 5,507,422
Effective search space: 154207816
Effective search space used: 154207816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)