BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780213|ref|YP_003064626.1| hypothetical protein
CLIBASIA_00490 [Candidatus Liberibacter asiaticus str. psy62]
(63 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780213|ref|YP_003064626.1| hypothetical protein CLIBASIA_00490 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 63
Score = 123 bits (309), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY 60
MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY
Sbjct: 1 MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDDNMTIDEEYLEKLVVESLDRSLRCNY 60
Query: 61 EKK 63
EKK
Sbjct: 61 EKK 63
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 21.9 bits (45), Expect = 2.2, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
Query: 13 EVNSILKEEIDDISVVSLPLS 33
E+NS+LKEE I+ V LP++
Sbjct: 444 EINSLLKEE---IAAVILPIN 461
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 257
Score = 21.9 bits (45), Expect = 2.2, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 14 VNSILKEEIDDISVVSLPLSDDNMTIDE 41
+N I K + +I + +PL+DD I E
Sbjct: 63 INHIEKHQAGEIIINGIPLNDDIRNIHE 90
>gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 412
Score = 21.9 bits (45), Expect = 2.3, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 18 LKEEIDDISVVSLPLSDDNMTID 40
+K E D+S+ + L+DD +TID
Sbjct: 37 IKIEYFDLSIQNRDLTDDQVTID 59
>gi|254780141|ref|YP_003064554.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 208
Score = 21.6 bits (44), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 1 MGFITSLSKWDIEVNSILKEEIDDISVVSLPLSDD 35
+ FI SL++ ++S EI D ++ SLPLSD+
Sbjct: 178 LHFIQSLNRAFSRISS----EIIDWTLSSLPLSDN 208
>gi|254780936|ref|YP_003065349.1| hypothetical protein CLIBASIA_04175 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 182
Score = 21.2 bits (43), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 16 SILKEEIDDISVVSLPLSDDNMTIDE 41
+ L+ ++ +++VS LSD +M D+
Sbjct: 130 AALQRKVKKVTIVSTVLSDPSMASDQ 155
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 20.8 bits (42), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 28 VSLPLSDDNMTIDEEYLEKLVVESLDRSLRC 58
+SLP D +T+ +K +ES D R
Sbjct: 178 ISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
>gi|254780227|ref|YP_003064640.1| pyrophosphate--fructose-6-phosphate 1-phosphotransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 426
Score = 20.8 bits (42), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 18 LKEEIDDISVVSLPLSDDN 36
LKE+ +I+VV LP + DN
Sbjct: 161 LKEKNYNITVVGLPKTIDN 179
>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 623
Score = 20.8 bits (42), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 3 FITSLSKWDIEVNSILKEEIDDI-----SVVSLPLSDDNMTIDEEYLEKLVVESLDRSLR 57
F S++K+ ++S L+ + ++I +SL +D +T+D + LEK V+ SL
Sbjct: 200 FSDSMAKYGTGMSSALEGKKENIFLADDQGISLKSKEDMLTLDIQSLEKSPVDDCGISLT 259
Query: 58 CNYEKK 63
+ +K+
Sbjct: 260 ESPKKR 265
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.313 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,051
Number of Sequences: 1233
Number of extensions: 1287
Number of successful extensions: 13
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 63
length of database: 328,796
effective HSP length: 34
effective length of query: 29
effective length of database: 286,874
effective search space: 8319346
effective search space used: 8319346
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 31 (16.5 bits)