HHsearch alignment for GI: 254780214 and conserved domain: PRK00055
>PRK00055 ribonuclease Z; Reviewed.
Probab=100.00 E-value=0 Score=338.44 Aligned_cols=236 Identities=22% Similarity=0.263 Sum_probs=179.5
Q ss_pred EEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCC--CCCCEEEE
Q ss_conf 2599998541789651337887877778767744430699993367789718999879841566752233--42059999
Q gi|254780214|r 4 YYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQV--LSIDAVLY 81 (271)
Q Consensus 4 ~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i--~~Id~I~i 81 (271)
T Consensus 1 mmkit~LGtg~~--~p~~--------------~R~~s~~li~~-----~~~~iliD~G~G~~~~l~~~~~~~~~l~~I~i 59 (259)
T PRK00055 1 MMELTFLGTGSG--VPTP--------------TRNVSSILLRL-----GGELWLFDCGEGTQRQMLRAGIGPRKIDRIFI 59 (259)
T ss_pred CCEEEEEECCCC--CCCC--------------CCCCCEEEEEE-----CCEEEEEECCCHHHHHHHHCCCCHHHCCEEEE
T ss_conf 948999906899--8899--------------99648899999-----99089995881599999981999557658999
Q ss_pred ECCCHHHHHHCCHHH--HHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCE
Q ss_conf 743524220111024--333178211101311202321002222101366775310012321123443334201158748
Q gi|254780214|r 82 THPHADHIHGIDGLR--GYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVI 159 (271)
Q Consensus 82 TH~H~DHi~Gl~~Lr--~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (271)
T Consensus 60 TH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gp~~~~~~l~~~~~~~~~-~~--~~~----~~~~~~~~~~~~~~~~~~~~ 132 (259)
T PRK00055 60 THLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGS-HL--PYR----IAIHEIDEKTEGVVFDDDGF 132 (259)
T ss_pred ECCCHHHHCHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCC-CC--CCC----EEEEECCCCCCCEEEECCCE
T ss_conf 643357665289999998745999716999177899999999885066-88--972----56763257987328964998
Q ss_pred EEEEEEEECCCEECCCCCCC----CEEEECCCCCCHHHHHHHHCCHHEEEEECCCCCC------CCCCCCHHHHHHHHHH
Q ss_conf 99999950776211233468----6253032330016788862221102530233576------8875799999999997
Q gi|254780214|r 160 EAIPILQQHGRISSLGFRFG----NVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGL------HSSHFSLSESLKKIEL 229 (271)
Q Consensus 160 ~i~~~~~~Hg~~~~~Gyri~----~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~~------~~~H~~~~ea~~~~~~ 229 (271)
T Consensus 133 ~i~~~~~~H~-~~s~Gyri~~~g~~i~ysgDt~-~~~~l~~~~~gaDlLI~ea~~~~~~~~~~~~~~Hst~~~a~~~a~~ 210 (259)
T PRK00055 133 TVTAFPLDHS-IPCLGYRFEEKGRKIAYVGDTR-PCEALVELAKGADLLVHEATFGDEDEAKAKEHYHSTAKQAAEIAKE 210 (259)
T ss_pred EEEEEECCCC-CCEEEEEEEECCCEEEEECCCC-CCHHHHHHHCCCCEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9999986799-8627999996881699952788-6888998860699999946557742244137766899999999998
Q ss_pred CCCCEEEEECCCCCCCH---H----HHHHHCCCCCEEEEECCEEEEEC
Q ss_conf 29977999768889888---8----99986799819902044899626
Q gi|254780214|r 230 INPKNAILTHMHVDLDY---D----MVLKSTPSRVVPAFDGMQFSSPI 270 (271)
Q Consensus 230 ~~~k~~~LtHls~~~~~---~----~~~~~~~~~v~~A~DGm~i~l~~ 270 (271)
T Consensus 211 ~~~k~lvLtH~~p~~~~~~~~~~~~e~~~~f-~~v~~A~Dgm~i~l~~ 257 (259)
T PRK00055 211 AGVKRLILTHFSPRYTDPEELQLLKEAREIF-PNTELAEDFMRVEVPK 257 (259)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHC-CCCEECCCCCEEECCC
T ss_conf 4999999992077889824999999999878-9929816998996279