HHsearch alignment for GI: 254780214 and conserved domain: TIGR03675
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.67 E-value=1.6e-16 Score=122.38 Aligned_cols=178 Identities=21% Similarity=0.215 Sum_probs=100.1
Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHH---------HHHHCC
Q ss_conf 87259999854178965133788787777876774443069999336778971899987984156---------675223
Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYM---------QVLREQ 72 (271)
Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~---------ql~~~~ 72 (271)
T Consensus 172 ~~~vrit~LG~~~eV---------------------GRSc~l~~~-----~~~~illDcG~~~~~~~~~~~P~~d~~e~~ 225 (630)
T TIGR03675 172 DRWVRVTALGGFREV---------------------GRSALLLST-----PESRILLDCGVNVGANGDNAYPYLDVPEFQ 225 (630)
T ss_pred CCEEEEEECCCCCCC---------------------CCEEEEEEC-----CCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 974999834676702---------------------645899963-----981799988888777775458865677798
Q ss_pred CCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCC-CCCCCCCCCCC-CCCCCCCC---CC-CCC
Q ss_conf 34205999974352422011102433317821110131120232100222-21013667753-10012321---12-344
Q gi|254780214|r 73 VLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESF-RYCFKALDDRT-YPPIVNPI---VI-ENN 146 (271)
Q Consensus 73 i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~-~y~f~~~~~~~-~~~~~~~~---~~-~~~ 146 (271)
T Consensus 226 ~~~IDAVvlTHAHLDH~G~LP~L----~k~Gf~GpIy~T~pT~dL~~llL~D~~-ki~~~e~~~plYt~~dv~~~l~~~~ 300 (630)
T TIGR03675 226 LDELDAVVITHAHLDHSGLVPLL----FKYGYDGPVYCTPPTRDLMTLLQLDYI-DVAQREGKKPPYSSKDVREALKHTI 300 (630)
T ss_pred CCCCCEEEEECCCCCCCCCCCHH----HHCCCCCCEEECHHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHCCE
T ss_conf 01185899833532125632188----764888988865459999999999899-9987058999989999999984456
Q ss_pred CCCCCEECCC-CCEEEEEEEEECCCEECCC-CCCC----CEEEECCCCCCHHHHHHHH----CCHHEEEEECCC
Q ss_conf 3334201158-7489999995077621123-3468----6253032330016788862----221102530233
Q gi|254780214|r 147 DVPICMKSAG-GVIEAIPILQQHGRISSLG-FRFG----NVAYCTDVNAFPAESLEKL----QNLDFLIIDALK 210 (271)
Q Consensus 147 ~~~~~~~~~~-~~i~i~~~~~~Hg~~~~~G-yri~----~~~Y~~Dt~~~~e~~~~~l----~~~D~lI~d~l~ 210 (271)
T Consensus 301 ~l~y~~~~~i~~~ik~tf~~AGHILGSAmv~l~i~~g~~~ilfTGD~~~~~~rll~~A~~~~~~~D~LI~ESTY 374 (630)
T TIGR03675 301 TLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTY 374 (630)
T ss_pred ECCCCCEEECCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 24899859717984999976886104479999976896799995998999776768756787777789997435