HHsearch results for GI: 254780214 and protein with PDBid: 3af5_A
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.68 E-value=3.7e-17 Score=124.89 Aligned_cols=180 Identities=21% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHH--HH----------
Q ss_conf 872599998541789651337887877778767744430699993367789718999879841566--75----------
Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQ--VL---------- 69 (271)
Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~q--l~---------- 69 (271)
++.||+|+||... .+| +++.+|+. ++.+||||||-.+... -.
T Consensus 186 ~~~vrit~LGG~~-----EIG----------------rs~~lv~~-----~~~~ILlDcG~~~~~~~~~~~~~p~~~~p~ 239 (651)
T 3af5_A 186 SRWIRITGLGGFR-----EVG----------------RSALLVQT-----DESFVLVDFGVNVAMLNDPYKAFPHFDAPE 239 (651)
T ss_dssp CSCEEEEEEECSS-----SSS----------------CCEEEEEE-----SSCEEEECCCCCGGGTTCHHHHSCCTTCHH
T ss_pred CCCEEEEEECCCC-----CCC----------------CCEEEEEE-----CCCEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9827999936888-----624----------------66799996-----796899989988565667311367767765
Q ss_pred ---HCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf ---223342059999743524220111024333178211101311202321002222101366775310012321-----
Q gi|254780214|r 70 ---REQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPI----- 141 (271)
Q Consensus 70 ---~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~----- 141 (271)
-...++||||||||+|.||+++||.|- .......|||+++.|.+.+.....-..+........+.....
T Consensus 240 ~~~l~~~~~idAVlITHaH~DHiG~LP~L~---~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~ 316 (651)
T 3af5_A 240 FQYVLREGLLDAIIITHAHLDHCGMLPYLF---RYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEV 316 (651)
T ss_dssp HHHHHHTTCCCEEECSCSSHHHHTTHHHHH---HTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHH
T ss_pred CCCCCCCCCCCEEEECCCCHHHHCCHHHHH---HHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 212367565568997889878868688999---73788887766789999999999999998761167777899999999
Q ss_pred --CCCCCCCCCCEECCCCCEEEEEEEEECCCEECCCCCC------CCEEEECCCCCCHHHHHH----HHCCHHEEEEECC
Q ss_conf --1234433342011587489999995077621123346------862530323300167888----6222110253023
Q gi|254780214|r 142 --VIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF------GNVAYCTDVNAFPAESLE----KLQNLDFLIIDAL 209 (271)
Q Consensus 142 --~~~~~~~~~~~~~~~~~i~i~~~~~~Hg~~~~~Gyri------~~~~Y~~Dt~~~~e~~~~----~l~~~D~lI~d~l 209 (271)
.+...+....... +.+++++++...|.. .+..+.+ ++++|++|.+.-+...++ ....+|.|++|++
T Consensus 317 ~~~~~~l~yge~~~i-~pd~~it~~~aGH~l-Gsa~~~i~i~~~~~~IvyTGDfk~~~~~ll~~a~~~~~rvd~Li~EsT 394 (651)
T 3af5_A 317 IKHTITLDYGEVRDI-SPDIRLTLHNAGHIL-GSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMEST 394 (651)
T ss_dssp HHTEEECCTTCCEEE-ETTEEEEEEECSSST-TCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCBCSSCSEEEEECT
T ss_pred HHCCEEECCCCEEEE-CCCEEEEECCCCCCC-CCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCEEEEEE
T ss_conf 854199579984980-798799865689887-030899995688668997778788877566876545123040023320
Q ss_pred CCC
Q ss_conf 357
Q gi|254780214|r 210 KNG 212 (271)
Q Consensus 210 ~~~ 212 (271)
.-.
T Consensus 395 yg~ 397 (651)
T 3af5_A 395 YGG 397 (651)
T ss_dssp TCS
T ss_pred CCC
T ss_conf 267