HHsearch results for GI: 254780214 and protein with PDBid: 3bk2_A
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A*
Probab=99.79 E-value=5.3e-19 Score=136.38 Aligned_cols=222 Identities=18% Similarity=0.171 Sum_probs=125.5
Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHH-------------HHH
Q ss_conf 8725999985417896513378878777787677444306999933677897189998798415-------------667
Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY-------------MQV 68 (271)
Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r-------------~ql 68 (271)
++..+++.||-+.- +| +++.+++. ++..||||||-.+. ...
T Consensus 14 ~~~i~i~pLGG~~E-----IG----------------~n~~~~e~-----~~~~iliD~G~~f~~~~~~gid~iiPd~~~ 67 (562)
T 3bk2_A 14 QDHVEIIPLGGMGE-----IG----------------KNITVFRF-----RDEIFVLDGGLAFPEEGMPGVDLLIPRVDY 67 (562)
T ss_dssp CCCEEEEEEESBSB-----SS----------------CCEEEEEE-----TTEEEEECCCCBCCCTTSTTCCEEEECCHH
T ss_pred CCEEEEEECCCCCH-----HH----------------HCEEEEEE-----CCEEEEEECCCCCCCCCCCCCCEEECCCHH
T ss_conf 88289996688890-----45----------------16799999-----995999958999897568897589369689
Q ss_pred HHCCCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52233420599997435242201110243331782111013112023210022221013667753100123211234433
Q gi|254780214|r 69 LREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDV 148 (271)
Q Consensus 69 ~~~~i~~Id~I~iTH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~ 148 (271)
+..+.++|+||||||+|.||+++||.|.+.....+.++|||+++.|.+.++.++... .... .......+.
T Consensus 68 l~~~~~~i~ai~lTHaH~DH~Galp~Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~--~~~~----~~~~~~~i~---- 137 (562)
T 3bk2_A 68 LIEHRHKIKAWVLTHGHEDHIGGLPFLLPMIFGKESPVPIYGARLTLGLLRGKLEEF--GLRP----GAFNLKEIS---- 137 (562)
T ss_dssp HHHTGGGEEEEECCCCCHHHHTTHHHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHT--TCCS----TTSEEEEEC----
T ss_pred HHHCCCCCEEEEECCCCHHHHCCHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHC--CCCC----CCCCEEEEC----
T ss_conf 873766725999799855653772878875214568858887999999999999972--9985----555314736----
Q ss_pred CCCEECC-CCCEEEEEEEEECCCEECCCCCC----CCEEEECCCCCC-------H--HHHHHHH--CCHHEEEEECCCCC
Q ss_conf 3420115-87489999995077621123346----862530323300-------1--6788862--22110253023357
Q gi|254780214|r 149 PICMKSA-GGVIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAF-------P--AESLEKL--QNLDFLIIDALKNG 212 (271)
Q Consensus 149 ~~~~~~~-~~~i~i~~~~~~Hg~~~~~Gyri----~~~~Y~~Dt~~~-------~--e~~~~~l--~~~D~lI~d~l~~~ 212 (271)
...... +..++++++++.|.-..++||.| ++++|++|.+.- + ...+..+ .++++|+.|++...
T Consensus 138 -~~~~~~~g~~f~v~~~~v~hsipga~~~~i~t~~g~IlyTGDfr~~~~~~~~~~~d~~~~~~~~~~~vl~l~~~st~~~ 216 (562)
T 3bk2_A 138 -PDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAE 216 (562)
T ss_dssp -TTCEEEETTTEEEEEEECCCSSSSCEEEEEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTT
T ss_pred -CCCEEEEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCC
T ss_conf -9965998211899988536777764699998299789998255577777655656889985227778539976878889
Q ss_pred CCCCCC----CHHH-HHHHHHHCCCCEEEEECCCCCCCHH----HHHHHCCCCCEEEEECC
Q ss_conf 688757----9999-9999997299779997688898888----99986799819902044
Q gi|254780214|r 213 LHSSHF----SLSE-SLKKIELINPKNAILTHMHVDLDYD----MVLKSTPSRVVPAFDGM 264 (271)
Q Consensus 213 ~~~~H~----~~~e-a~~~~~~~~~k~~~LtHls~~~~~~----~~~~~~~~~v~~A~DGm 264 (271)
++.+. .+.+ ..+..++ ...|++++-++.++.-- ++++. .+..++++|.
T Consensus 217 -~~~~~~~E~~~~~~i~~~~~~-~~grvii~~fasni~Riq~i~~~a~~--~~r~v~~~g~ 273 (562)
T 3bk2_A 217 -RPGYTPSEMEIAKELDRVIGR-APGRVFVTTFASHIHRIQSVIWAAEK--YGRKVAMEGR 273 (562)
T ss_dssp -CCSCCCCHHHHHHHHHHHHHH-CSSCEEEECCTTCHHHHHHHHHHHHH--TTCEEEEECH
T ss_pred -CCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHH--HCCEEEECCC
T ss_conf -899997889999999999985-79989999704058899999999998--4988985051