RPSBLAST alignment of GI: 254780214 and protein with PDBid: 1y44
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320
Score = 68.6 bits (166), Expect = 1e-12
Identities = 51/322 (15%), Positives = 89/322 (27%), Gaps = 76/322 (23%)
Query: 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65
LG GA + P R +S+ + + ER S + D G
Sbjct: 2 ELLFLGTGAGI----------------PAKARNVTSVALKLLEERRSV--WLFDCGEATQ 43
Query: 66 MQVLREQV--LSIDAVLYTHPHADHIHGIDGLR-GYFLKQKRPIDVYAAPDCMKHLFESF 122
Q+L + I+ + TH H DH++G+ GL + P +K E+
Sbjct: 44 HQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETS 103
Query: 123 RYCFKAL--DDRTYPPIVNPIVIENNDVPICMKSA------------------------- 155
K I IV E++ + S
Sbjct: 104 LAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVL 163
Query: 156 ----------------GGVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQ 199
G + +G + G + + E +
Sbjct: 164 KEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELAR 223
Query: 200 NLDFLIIDA------LKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVL--- 250
+ D ++ +A K H + ++ + K ILTH+ D L
Sbjct: 224 DCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQ 283
Query: 251 ---KSTPSRVVPAFDGMQFSSP 269
V A+D ++ + P
Sbjct: 284 KEAVDVFPNSVAAYDFLEVNVP 305