RPSBLAST alignment of GI: 254780214 and protein with PDBid: 3af5

>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 38/206 (18%), Positives = 64/206 (31%), Gaps = 35/206 (16%)

Query: 53  NTTVIVDTGPDFYMQVLREQVL---------------SIDAVLYTHPHADHIHGIDGLRG 97
            + V+VD G +  M     +                  +DA++ TH H DH     G+  
Sbjct: 211 ESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHC----GMLP 266

Query: 98  YFLKQKRP-IDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAG 156
           Y  +       +Y  P     +    +   +        P+  P  I+           G
Sbjct: 267 YLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYG 326

Query: 157 GVIEAIP--ILQQHGRISSLGFRF---------GNVAYCTDVNAFPAESLE----KLQNL 201
            V +  P   L  H     LG             N+A   D    P   LE    K   L
Sbjct: 327 EVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRL 386

Query: 202 DFLIIDALKNGLHSSHFSLSESLKKI 227
           + L++++   G +       E+ K++
Sbjct: 387 ETLVMESTYGGANDIQMPREEAEKRL 412