RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase
protein [Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
seattle structural genomics center for infectious
disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar
abortus}
Length = 293
Score = 219 bits (559), Expect = 5e-58
Identities = 139/267 (52%), Positives = 181/267 (67%), Gaps = 5/267 (1%)
Query: 1 MKDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDT 60
++ FT+LGCG+S GVPRI GDWG CDP NPKNRR R+SL + R G+NT V++DT
Sbjct: 29 LR----FTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDT 84
Query: 61 GPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120
GPDF MQ++ V +DA +YTHPHADHIHGID LR Y + R +DVYA L++
Sbjct: 85 GPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYD 144
Query: 121 SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGN 180
+F YCF+ +YPPI++ I P ++ AGG I P Q HG I SLGFR G+
Sbjct: 145 TFGYCFETPVGSSYPPILSMHDIAPET-PFSIEGAGGAIRFEPFSQVHGDIESLGFRIGS 203
Query: 181 VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM 240
V YCTDV+AFP +SL+ +++ D LII AL+ H SHFSL E+L+ IE ++PK AILTHM
Sbjct: 204 VVYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHM 263
Query: 241 HVDLDYDMVLKSTPSRVVPAFDGMQFS 267
HV LDY+ V++ TP V P +DG++F
Sbjct: 264 HVPLDYETVMRETPHHVEPGYDGLRFE 290
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida KT2440} PDB: 1xto_A
Length = 321
Score = 154 bits (390), Expect = 2e-38
Identities = 51/308 (16%), Positives = 91/308 (29%), Gaps = 59/308 (19%)
Query: 8 TILGCGASLGVPRITGDWGAC----DPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD 63
+LG A G P+ + C D T RT+SS+ + ++ + PD
Sbjct: 6 QVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIAL----SDDGVHWILCNASPD 61
Query: 64 FYMQVLREQVL---------SIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114
Q+ + I+A++ DH G+ LR + P V+
Sbjct: 62 IRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR-----EGCPHQVWCTDMV 116
Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVP--------ICMKSAGGVIEAIPILQ 166
+ L F L N I +E + V P
Sbjct: 117 HQDLTTGFPLFNM-LSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRF 175
Query: 167 QHGRISSLGFRF------GNVAYCTDVNAFPAESLEKLQNLDFLIIDAL----------- 209
+LG G + Y + + L + D L++D
Sbjct: 176 DPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEMQRRG 235
Query: 210 ------KNGLHSSHFSLSESLKKIELINPKNAILTHMH-----VDLDYDMVLKSTPSRVV 258
+ H + +L+ ++ + +L H++ +D + + V
Sbjct: 236 VGTRTGREMGHLAQNGPGGTLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVE 295
Query: 259 PAFDGMQF 266
AFDGM
Sbjct: 296 VAFDGMSI 303
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 125 bits (315), Expect = 1e-29
Identities = 25/228 (10%), Positives = 64/228 (28%), Gaps = 15/228 (6%)
Query: 54 TTVIVDTGPD--FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKR--PIDVY 109
+V+ DTG F + + VL +H H DH G+ L G + ++ Y
Sbjct: 38 DSVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGKRVWLRKEALDQKY 97
Query: 110 AAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPI----------CMKSAGGVI 159
+ + Y + + + ++
Sbjct: 98 SGERYAGADWNEVLYYNTGKFVIERITEIGKNMFLLGPANLRGKVPTGDFFVERNGERRK 157
Query: 160 EAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFS 219
+ Q + G ++ + E +++ SS
Sbjct: 158 DLFEDEQTLVVRTKEGLVVITGCSHRGIDNILLDIAETFNERIKMVVGGFHLL-KSSDDE 216
Query: 220 LSESLKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVVPAFDGMQFS 267
+ + +K + + + H + D+ + +++ + G++
Sbjct: 217 IEKIVKAFNELGVETVVPCHCTGERAVDIFKREFLGKIMDCYAGLKLE 264
>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast
structural genomics consortium, NESG, protein structure
initiative; 2.80A {Pseudomonas putida KT2440} SCOP:
d.157.1.6
Length = 311
Score = 123 bits (309), Expect = 4e-29
Identities = 52/313 (16%), Positives = 91/313 (29%), Gaps = 67/313 (21%)
Query: 8 TILGCGASLGVPRITGDWGAC----DPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD 63
+LG A G P+ + C D T RT+SS+ + ++ + PD
Sbjct: 4 QVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIAL----SDDGVHWILCNASPD 59
Query: 64 FYMQVLREQVL---------SIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114
Q+ + I+A++ DH G+ LR + P V+
Sbjct: 60 IRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR-----EGCPHQVWCTDMV 114
Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL 174
+ L F L N I +E + V A ++ P +
Sbjct: 115 HQDLTTGFPLFN-MLSHWNGGLQWNRIELEGSFVI----DACPNLKFTPFPLRSAAPPYS 169
Query: 175 GFRF------------------GNVAYCTDVNAFPAESLEKLQNLDFLIIDALKN----- 211
RF G + Y + + L + D L++D
Sbjct: 170 PHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEM 229
Query: 212 ------------GLHSSHFSLSESLKKIELINPKNAILTHM-----HVDLDYDMVLKSTP 254
H + L+ ++ + +L H+ +D + +
Sbjct: 230 QRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLR 289
Query: 255 SRVVPAFDGMQFS 267
V AFDGM
Sbjct: 290 RGVEVAFDGMSIE 302
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli}
Length = 258
Score = 123 bits (308), Expect = 5e-29
Identities = 55/268 (20%), Positives = 92/268 (34%), Gaps = 29/268 (10%)
Query: 7 FTILGCGASLGVPRITGDWGACDPT--NPKNRRTRSSLKISRVSERGSNTTVIVDTGPDF 64
T+ G G + GVP + AC +P+ RR S + + ++ ++D G
Sbjct: 5 LTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVV-----KFNDAITLIDAGLHD 59
Query: 65 YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRY 124
R S L TH H DH+ G+ PI VY PD
Sbjct: 60 LAD--RWSPGSFQQFLLTHYHMDHVQGLFP---LRWGVGDPIPVYGPPDEQGCDDLFKHP 114
Query: 125 CFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYC 184
LD ++ V + + + VA+
Sbjct: 115 GL--LDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLL----------ETAHSRVAWL 162
Query: 185 TDVNAFPAESLEKLQNLD--FLIIDAL---KNGLHSSHFSLSESLKKIELINPKNAILTH 239
+D P ++L+ L+N +++D + +H L+ L ++I ILTH
Sbjct: 163 SDTAGLPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTH 222
Query: 240 MHVDLDYDMVLKSTPSRVVPAFDGMQFS 267
+ D ++ + PS FDGM+
Sbjct: 223 ISHQFDAWLMENALPSGFEVGFDGMEIG 250
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
2.10A {Thermoanaerobacter tengcongensis MB4}
Length = 284
Score = 73.9 bits (180), Expect = 4e-14
Identities = 37/243 (15%), Positives = 67/243 (27%), Gaps = 27/243 (11%)
Query: 50 RGSNTTVIVDTGPDF----YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105
+ N ++VDTG ++ V I V+ TH H DHI G+ GL + K
Sbjct: 39 KKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIY 98
Query: 106 I------DVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDV---PICMKSAG 156
YA + F F + I IE +
Sbjct: 99 THKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVITNTDITYDN 158
Query: 157 GVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLI----------- 205
+++ G+ F + + + + ++
Sbjct: 159 EFTTKNFFVEKEGKRIPDKFLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSY 218
Query: 206 IDALKNGLHSSHFS---LSESLKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVVPAFD 262
I +L G H + + +KIE K + H +Y + ++
Sbjct: 219 IKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEYGFLKSVLKDKISYLTT 278
Query: 263 GMQ 265
Sbjct: 279 SSS 281
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein structure initiative; 1.50A
{Bacillus anthracis str} SCOP: d.157.1.9
Length = 268
Score = 71.3 bits (173), Expect = 2e-13
Identities = 34/282 (12%), Positives = 78/282 (27%), Gaps = 50/282 (17%)
Query: 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTG 61
+ T++G P+ S ++VD G
Sbjct: 22 SNAMKMTVVGFWGGF----------------PEAGEATSGYLF-----EHDGFRLLVDCG 60
Query: 62 PDFYMQVLREQVLS-IDAVLYTHPHADHIHGIDG------LRGYFLKQKRPIDVYAAPDC 114
Q+ + S IDAV+ +H H DH+ I + Q + +Y
Sbjct: 61 SGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFD 120
Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL 174
+ ++ I + + +
Sbjct: 121 ENGFHSLTHEPH--------------TKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMR 166
Query: 175 GFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDA----LKNGLHSSHFSLSESLKKIELI 230
++ + +++ E + ++ D I + + + H + +E +
Sbjct: 167 ITAGNDIVVYSADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDA 226
Query: 231 NPKNAILTHMHVDLDYDMVL----KSTPSRVVPAFDGMQFSS 268
N K +LTH+ + ++ + + A G ++S
Sbjct: 227 NVKELLLTHLPHTGNPADLVTEAKQIFSGHITLAHSGYVWNS 268
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A
{Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Length = 320
Score = 68.6 bits (166), Expect = 1e-12
Identities = 51/322 (15%), Positives = 89/322 (27%), Gaps = 76/322 (23%)
Query: 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65
LG GA + P R +S+ + + ER S + D G
Sbjct: 2 ELLFLGTGAGI----------------PAKARNVTSVALKLLEERRSV--WLFDCGEATQ 43
Query: 66 MQVLREQV--LSIDAVLYTHPHADHIHGIDGLR-GYFLKQKRPIDVYAAPDCMKHLFESF 122
Q+L + I+ + TH H DH++G+ GL + P +K E+
Sbjct: 44 HQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETS 103
Query: 123 RYCFKAL--DDRTYPPIVNPIVIENNDVPICMKSA------------------------- 155
K I IV E++ + S
Sbjct: 104 LAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVL 163
Query: 156 ----------------GGVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQ 199
G + +G + G + + E +
Sbjct: 164 KEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELAR 223
Query: 200 NLDFLIIDA------LKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVL--- 250
+ D ++ +A K H + ++ + K ILTH+ D L
Sbjct: 224 DCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQ 283
Query: 251 ---KSTPSRVVPAFDGMQFSSP 269
V A+D ++ + P
Sbjct: 284 KEAVDVFPNSVAAYDFLEVNVP 305
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 52.8 bits (125), Expect = 8e-08
Identities = 43/320 (13%), Positives = 78/320 (24%), Gaps = 75/320 (23%)
Query: 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65
+ LG A + P R +++ + + + + D G
Sbjct: 3 NLIFLGTSAGV----------------PTRTRNVTAILL-NLQHPTQSGLWLFDCGEGTQ 45
Query: 66 MQVLREQV--LSIDAVLYTHPHADHIHGID--GLRGYFLKQKRPIDVYAAPDCMKHLFES 121
Q+L +D + +H H DH+ G+ +P+ +Y + + +
Sbjct: 46 HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETA 105
Query: 122 FRYCFKAL-----------------DDRTYPPIVNPIVIENNDVPICMKSAGGV------ 158
R R +E I A G
Sbjct: 106 LRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQAL 165
Query: 159 ----IEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLD------------ 202
+ P+ Q+ ++ G D A P D
Sbjct: 166 KAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAK 225
Query: 203 ---------FLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM---HVDLDYDMVL 250
L I H S ++ I+TH+ + D +L
Sbjct: 226 GVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLL 285
Query: 251 ---KSTPSRVVPAFDGMQFS 267
+S A D F+
Sbjct: 286 RECRSIFPATELANDFTVFN 305
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding
protein; PCE, hydrolase; HET: PC BTB; 1.92A
{Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8
PDB: 1wra_A*
Length = 547
Score = 52.6 bits (125), Expect = 9e-08
Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 21/225 (9%)
Query: 35 NRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQ-VLSIDAVLYTHPHADHIHGID 93
SR R T D + L+E V +D +L TH H+DHI +D
Sbjct: 36 EDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVD 95
Query: 94 GL-----RGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNP------IV 142
L +K + + + + + I N
Sbjct: 96 ELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQ 155
Query: 143 IENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAFPAESLEKL 198
+ D+ + +SL + D++ E
Sbjct: 156 FGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLD--NVHGAEDK 213
Query: 199 QNLDFLIIDALKNGLH-SSHFSLSESLKKIELINPKNAILTHMHV 242
+D +K H ++ S ++ I+ ++P + T +
Sbjct: 214 YGPLIGKVDLMKFNHHHDTNKSNTK--DFIKNLSPSLIVQTSDSL 256
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.97A {Thermotoga maritima}
SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 49.0 bits (115), Expect = 1e-06
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%)
Query: 56 VIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGL---RGYFLKQKRPIDVYAAP 112
++ D G L +V + V TH H DHI G+ G+ R + + P
Sbjct: 22 ILFDAGEGVSTT-LGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYP 80
Query: 113 DCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIP 163
+ + + E + +A D + V+P+ ++
Sbjct: 81 EGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFR 131
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 47.9 bits (113), Expect = 3e-06
Identities = 30/223 (13%), Positives = 58/223 (26%), Gaps = 12/223 (5%)
Query: 28 CDP--TNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPH 85
D K +K +R + + + + IDAVL TH H
Sbjct: 60 VDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDH 119
Query: 86 ADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHL----FESFRYCFKALDDRTYPPIVNPI 141
DHI ++ + C+ R D +
Sbjct: 120 NDHI-DVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIH 178
Query: 142 VIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF---GNVAYCTDVNAFPA-ESLEK 197
++ D + A + + G++ + D +
Sbjct: 179 ALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGN 238
Query: 198 LQNLDFLIIDALKNGLHS-SHFSLSESLKKIELINPKNAILTH 239
+D + +N + ++ L+ E +N K I H
Sbjct: 239 EHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFH 281
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 47.4 bits (112), Expect = 3e-06
Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYF----LKQKRP 105
G TV++D G + + +D ++ TH H DHI + L + L +
Sbjct: 26 CGEKLTVMIDAGVSNSIADF-SFLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGF 84
Query: 106 IDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPIL 165
+ D +K L ES L + +V + G I
Sbjct: 85 KKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIY 144
Query: 166 QQHGRISSLGFRFGNVAYCTDV-----------NAFPA-------ESLEKLQNLDFLII 206
+ + + D P ESL++ L ++
Sbjct: 145 TPGHARHHMSVLVDDFLFTGDSAGAYFNGVVIPTTPPVIDYKMYMESLKRQIELKPKVV 203
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 46.3 bits (109), Expect = 8e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 50 RGSNTTVIVDTGPDFY-----MQVLREQV--LSIDAVLYTHPHADHIHGIDGLRGYFLKQ 102
RG + ++VDT +++ ++ I V+Y+H HADH G+ GL
Sbjct: 129 RGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVA 188
Query: 103 KRPIDVYAAPDCMKHLFESFRYCFKALDDR 132
+ + A M+ + A+ R
Sbjct: 189 SGAVQIIAPAGFMEAAIKENVLAGNAMMRR 218
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 45.9 bits (108), Expect = 9e-06
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 55 TVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDV 108
T + DT Y L + S ID ++ H DH + ++ +P +
Sbjct: 45 TTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGAL----PALIEACQPEKI 100
Query: 109 YAAPDCMKHLFESFRY 124
+ + K + F Y
Sbjct: 101 FTSSLGQKAMESHFHY 116
>2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase
fold, structural genomics, NPPSFA; HET: FLC; 2.50A
{Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A*
3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 45.7 bits (107), Expect = 1e-05
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 53 NTTVIVDTGPDF------YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPI 106
V++D G +DAVL TH H DH+ + ++
Sbjct: 23 GRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLP----KLFREGYRG 78
Query: 107 DVYAAPDCMKHLFESFRYCFKALDDRTYPP 136
VYA + + K +D+ + P
Sbjct: 79 PVYATRATVLLMEIVLEDALKVMDEPFFGP 108
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 45.3 bits (107), Expect = 1e-05
Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 10/118 (8%)
Query: 47 VSERGSNTTVIVDTGPDF--YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
+ + +VD G D Q + +++ +L TH H DH+ L ++
Sbjct: 18 IWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHY----- 72
Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAI 162
+ V + + + P+ + + D + ++ +
Sbjct: 73 GVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGD---RVSVGNVTLQVL 127
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 45.1 bits (106), Expect = 2e-05
Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 10/83 (12%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
++D+ + + ++ + I V+ H DH + +
Sbjct: 47 DDECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSL----KDHYHKFT 102
Query: 105 PIDVYAAPDCMKHLFESFRYCFK 127
C +HL +
Sbjct: 103 NATFVCTKKCQEHLKILYGMEKA 125
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 45.1 bits (106), Expect = 2e-05
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103
G + +V+ G +++ + + L TH H DH + Y +
Sbjct: 32 GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLL----PYLCPRL 87
Query: 104 RPIDVYAAPDCMKHL 118
+ V A+ +
Sbjct: 88 PNVQVLASERTCQAW 102
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha
fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB:
2wrs_A* 1ko3_A 1ko2_A
Length = 230
Score = 44.2 bits (104), Expect = 3e-05
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 50 RGSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
R + +++DT ++ ++ L + + TH H D + G+D LR
Sbjct: 44 RDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR------A 97
Query: 104 RPIDVYAAPDCMKHLFESFRYCF 126
+ YA+P +
Sbjct: 98 AGVATYASPSTRRLAEAEGNEIP 120
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 44.0 bits (103), Expect = 3e-05
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 47 VSERGSNTTVIVDTG-PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105
V + + IVD P + R+ + + VL TH H DH G + L K
Sbjct: 17 VIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVY 76
Query: 106 IDVYAAPDCMKH 117
Sbjct: 77 GGDDRIGALTHK 88
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER assymmetric UNIT., hydrolase; HET: GOL;
1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB:
1jt1_A* 1l9y_A
Length = 263
Score = 43.7 bits (102), Expect = 5e-05
Identities = 9/105 (8%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQ 102
+++++ + + +++ + +L +H H DH G + ++
Sbjct: 31 VTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQT--- 87
Query: 103 KRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENND 147
+ + + + F +D + + + +D
Sbjct: 88 --KAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHD 130
>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold,
hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP:
d.157.1.1 PDB: 1ko2_A
Length = 230
Score = 42.9 bits (100), Expect = 7e-05
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 50 RGSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
R + +++DT ++ ++ L + + TH H D + G+D LR
Sbjct: 44 RDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR------A 97
Query: 104 RPIDVYAAPDCMKHLFESFRYC 125
+ YA+P +
Sbjct: 98 AGVATYASPSTRRLAEVEGNEI 119
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio
cholerae o1 biovar eltor str}
Length = 379
Score = 42.4 bits (99), Expect = 1e-04
Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 13/180 (7%)
Query: 71 EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESF-----RYC 125
+ IDAVL +H HADHI L+ + P L+ + R
Sbjct: 129 FAIKEIDAVLASHDHADHIDVNVAA--AVLQNCGEHVKFIGPQACVDLWLGWGVPQERCI 186
Query: 126 FKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF----GNV 181
+ D V V+++ D + GV + ++ + G+V
Sbjct: 187 VAKVGDVLEIGDVKIRVLDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSV 246
Query: 182 AYCTDVNAFPA-ESLEKLQNLDFLIIDALKNGL-HSSHFSLSESLKKIELINPKNAILTH 239
+ D + +D ++ +N + + S+ L+ E ++ + + H
Sbjct: 247 YHSGDSHYSNYYAKHGNDYQIDVALLSYGENPRGVTDKMTSSDVLRAAESLDCQVVVPFH 306
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure
initiative, PSI, joint center for structural genomics;
HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1
d.157.1.3
Length = 410
Score = 42.0 bits (98), Expect = 1e-04
Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103
+ + V++D Y + + + I ++ H DH +
Sbjct: 58 KLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTI---G 114
Query: 104 RPIDVYAAPDCMKHLFESF 122
+++ A+ + L +
Sbjct: 115 HDVEIIASNFGKRLLEGFY 133
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, hydrolase; HET: BDS; 1.80A
{Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A*
1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 41.7 bits (97), Expect = 2e-04
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 51 GSNTTVIVDTGPDF-----YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105
+ ++DT + E+ I + +H H+D GI+ L R
Sbjct: 40 VNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLN------SRS 93
Query: 106 IDVYAAPDCMKHLFESFRYCFKALDDRTY 134
I YA+ + L + +
Sbjct: 94 IPTYASELTNELLKKDGKVQATNSFSGVN 122
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 41.9 bits (97), Expect = 2e-04
Identities = 26/204 (12%), Positives = 56/204 (27%), Gaps = 19/204 (9%)
Query: 47 VSERGSNTTVIVDTGPDF--YMQVLREQV---------LSIDAVLYTHPHADHIHGIDGL 95
+++ ++T VD D+ + + E + + +L TH H DH G L
Sbjct: 45 INDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKL 104
Query: 96 RGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSA 155
+ + +S K + + + + V +
Sbjct: 105 KAELEAMNS----TVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHV 160
Query: 156 GGVIEAIPILQQHGRISSLGFRFGNVAYCTDV--NAFPAESLEKLQNLDFLIIDALKN-- 211
++ + + F ++EK+ ++ AL
Sbjct: 161 LYKVQHPQHPNDGVALFTGDTMFIAGIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVT 220
Query: 212 GLHSSHFSLSESLKKIELINPKNA 235
+ H S + E P A
Sbjct: 221 FIFPGHEYTSGFMTFSEKTFPDRA 244
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidoreductase; HET: FMN; 1.70A
{Methanothermobacterthermautotrophicus} PDB: 2ohi_A*
2ohj_A*
Length = 404
Score = 41.7 bits (97), Expect = 2e-04
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 13/82 (15%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS---------IDAVLYTHPHADHIHGIDGLRGYFL 100
G ++D L +V +D ++ H DH +
Sbjct: 41 CGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLV----ELH 96
Query: 101 KQKRPIDVYAAPDCMKHLFESF 122
++ +Y +K L + +
Sbjct: 97 RRFPEAPIYCTEVAVKGLLKHY 118
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint
center for structural genomics, JCSG; 2.30A
{Parabacteroides distasonis atcc 8503}
Length = 235
Score = 41.7 bits (97), Expect = 2e-04
Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 27/192 (14%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVY 109
N ++ VD ++ D +L TH H DH+ + +K ++
Sbjct: 43 TYDNHSIQVDPVSEYADY---TTFPKADIILITHEHGDHLD----PKAIQAVEKSDTEII 95
Query: 110 AAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHG 169
A + K L + + + I A
Sbjct: 96 ANENSQKKL------------GKGKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRH 143
Query: 170 RISSLGFRFGN--VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKI 227
R + F V D P ++ L+++D + + ++S++ K
Sbjct: 144 RDNGYILTFDGLRVYIAGDTEDIP--EMKDLKDIDIAFLPVNQPY----TMTVSQAAKAA 197
Query: 228 ELINPKNAILTH 239
+ +PK H
Sbjct: 198 RMFSPKILYPYH 209
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 41.2 bits (95), Expect = 2e-04
Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 20/137 (14%)
Query: 53 NTTVIVDTGPDFYMQVLRE-------QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105
+++D G ++ + ID +L +H H DH + + R
Sbjct: 34 GRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRT 93
Query: 106 IDVYAAPDCMKHLFESFRYC---------FKALDDRTYPPIVNPI----VIENNDVPICM 152
+A + L + + D + I V E +
Sbjct: 94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWC 153
Query: 153 KSAGGVIEAIPILQQHG 169
AG V+ A + +
Sbjct: 154 YHAGHVLGAAMFMIEIA 170
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A
{Thermus thermophilus HB27} PDB: 3bk1_A*
Length = 562
Score = 41.0 bits (95), Expect = 3e-04
Identities = 32/186 (17%), Positives = 52/186 (27%), Gaps = 31/186 (16%)
Query: 53 NTTVIVDTG---------------PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRG 97
+ ++D G P L E I A + TH H DHI G+ L
Sbjct: 39 DEIFVLDGGLAFPEEGMPGVDLLIPRV--DYLIEHRHKIKAWVLTHGHEDHIGGLPFLLP 96
Query: 98 YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGG 157
++ P+ +Y A + L + P N I +D G
Sbjct: 97 MIFGKESPVPIYGARLTLGLLRGKLE------EFGLRPGAFNLKEISPDD----RIQVGR 146
Query: 158 VIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGL 213
H + G G + + D P K+ +L + + L
Sbjct: 147 YFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVL 206
Query: 214 HSSHFS 219
+
Sbjct: 207 LLIADA 212
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 41.1 bits (96), Expect = 3e-04
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 51 GSNTTVIVDTGPD-FYMQVLREQV-----LSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
V+ D + Q L + + L + AV TH H D + +
Sbjct: 38 TKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFN------NK 91
Query: 105 PIDVYAAPDCMKHLFESFRYCF 126
I YA + L + +
Sbjct: 92 GIKTYATAKTNEFLKKDGKATS 113
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding,
periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB:
1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A*
3f9o_A
Length = 227
Score = 40.8 bits (95), Expect = 4e-04
Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 25/172 (14%)
Query: 51 GSNTTVIVDTGPD-FYMQVLREQVLS-----IDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
G+ +V + L + + + V+ T+ H D G + K
Sbjct: 30 GAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVS 89
Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPI 164
E + K L + P+V P V+ + D G + A
Sbjct: 90 TRQTRDLMKSDWA--EIVAFTRKGLPEYPDLPLVLPNVVHDGD----FTLQEGKVRAFYA 143
Query: 165 LQQHGRISSLGFRFGNVAYCTDVNAFP-------------AESLEKLQNLDF 203
H + ++LE+L+ +
Sbjct: 144 GPAHTPDGIFVYFPDEQVLYGGCILKEKLGNLSFADVKAYPQTLERLKAMKL 195
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP:
d.157.1.10
Length = 429
Score = 40.0 bits (92), Expect = 6e-04
Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 10/129 (7%)
Query: 57 IVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMK 116
+ D + ++ AV +H H DH I Y + +
Sbjct: 66 LYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMI----NYLDPAVPLYTLKETKMILN 121
Query: 117 HLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGF 176
L + + + + +N+ + + G I + H +
Sbjct: 122 SLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKV------GEISVEIVPVDHDAYGASAL 175
Query: 177 RFGNVAYCT 185
+
Sbjct: 176 LIRTPDHFI 184
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 39.8 bits (92), Expect = 6e-04
Identities = 29/220 (13%), Positives = 64/220 (29%), Gaps = 34/220 (15%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQV------LSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
+ T +VDT + + + L ++ + +D ++ H +DH G ++
Sbjct: 42 VDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHA----GAFPAIMELCP 97
Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPI 164
V L Y I I + + P+
Sbjct: 98 DAHVLCTQRAFDSLKAH------------YSHIDFNYTIVKTGTSVSLGKRSLTFIEAPM 145
Query: 165 LQQHGRISSLGFRFGNVAYCTDVNAF---PAESLEKLQNLDFLIIDALK---NGLHSSHF 218
L + D + + + ++ +A K N L
Sbjct: 146 LHWPD-SMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSN 204
Query: 219 SLSESLKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVV 258
+++ L +I+ IN + H ++ + P R++
Sbjct: 205 LITKKLDEIQKINLAIKTIAPSH-----GIIWRKDPGRII 239
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 39.8 bits (92), Expect = 7e-04
Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 12/105 (11%)
Query: 51 GSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
V++D F ++ ++ + + TH H D G++ K
Sbjct: 34 TDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFG------KI 87
Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVP 149
Y+ L + + + D V +
Sbjct: 88 GAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPG 132
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 39.7 bits (92), Expect = 8e-04
Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 35/211 (16%)
Query: 53 NTTVIVDTG-------PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGL-RGYFLKQKR 104
N T+++D G + ++ + + ID ++ + P + + L +
Sbjct: 24 NVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFIS 83
Query: 105 PIDVYAAP-----------DCMK--HLFESFRYCFKALDD--RTYPPIVN-------PIV 142
I VYA D + + L+D ++ IV +
Sbjct: 84 RIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLR 143
Query: 143 IENNDVPICMKSAGGVIEAIPILQQHGRIS-----SLGFRFGNVAYCTDVNAFPAESLEK 197
+ + + +AG N+ + + L
Sbjct: 144 SRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLST 203
Query: 198 LQNLDFLIIDALKNGLHSSHFSLSESLKKIE 228
L +I + G S+ K
Sbjct: 204 LMRPSAIITTLDRFGSSQPFKKRSKIFKDTL 234
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 39.1 bits (90), Expect = 0.001
Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 17/115 (14%)
Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS-----------IDAVLYTHPHADHIHGIDGLRG- 97
+ V+VDTG ++ + +D + TH H DH+ G+
Sbjct: 103 NTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQL 162
Query: 98 -----YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENND 147
++ D + + + + F + P V +
Sbjct: 163 AFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFS 217
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic
resistance, structure, hydrolase, metal binding protein;
1.90A {Pseudomonas aeruginosa}
Length = 246
Score = 38.4 bits (88), Expect = 0.002
Identities = 23/199 (11%), Positives = 56/199 (28%), Gaps = 17/199 (8%)
Query: 47 VSERGSNTTVIVDTG-PDFYMQVLREQVLSID-----AVLYTHPHADHIHGIDGLRGYFL 100
V++ T VIV + + Q L + V + TH H D G + +
Sbjct: 34 VAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMG- 92
Query: 101 KQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIE 160
+ +++ + E + + + ++ ++ VP +
Sbjct: 93 -----AETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGK 147
Query: 161 AIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSL 220
+ +S G + L ++ +
Sbjct: 148 VFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLL-----FGGCMIKPKELGYLGDANVKAW 202
Query: 221 SESLKKIELINPKNAILTH 239
+S ++++ + K I H
Sbjct: 203 PDSARRLKKFDAKIVIPGH 221
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 38.5 bits (89), Expect = 0.002
Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 75 SIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAP 112
IDAV+ TH H DH GL K VY P
Sbjct: 237 QIDAVIVTHAHLDHQ----GLVPLLFKYGYEGPVYCTP 270
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 37.0 bits (85), Expect = 0.004
Identities = 38/206 (18%), Positives = 64/206 (31%), Gaps = 35/206 (16%)
Query: 53 NTTVIVDTGPDFYMQVLREQVL---------------SIDAVLYTHPHADHIHGIDGLRG 97
+ V+VD G + M + +DA++ TH H DH G+
Sbjct: 211 ESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHC----GMLP 266
Query: 98 YFLKQKRP-IDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAG 156
Y + +Y P + + + P+ P I+ G
Sbjct: 267 YLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYG 326
Query: 157 GVIEAIP--ILQQHGRISSLGFRF---------GNVAYCTDVNAFPAESLE----KLQNL 201
V + P L H LG N+A D P LE K L
Sbjct: 327 EVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRL 386
Query: 202 DFLIIDALKNGLHSSHFSLSESLKKI 227
+ L++++ G + E+ K++
Sbjct: 387 ETLVMESTYGGANDIQMPREEAEKRL 412
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein
structure initiative, joint center for structural
genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 37.2 bits (85), Expect = 0.004
Identities = 22/135 (16%), Positives = 35/135 (25%), Gaps = 26/135 (19%)
Query: 7 FTILGCGASLGVP-RITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65
IL G ++ VP R+ + V + +I+D G
Sbjct: 15 LKILVTGGNVFVPGRLNAHFSTV------------------VYLEHKDRRIIIDPGNLSS 56
Query: 66 MQVLREQV-------LSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHL 118
M L E+ I VL+TH H DHI +
Sbjct: 57 MDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNYLSFGTIV 116
Query: 119 FESFRYCFKALDDRT 133
+ + +
Sbjct: 117 GRIYSKVISSWKNVV 131
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET:
CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB:
1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A
2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A
2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ...
Length = 227
Score = 36.0 bits (82), Expect = 0.009
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 50 RGSNTTVIVDTGPD-FYMQVLREQV-----LSIDAVLYTHPHADHIHGIDGL 95
S V+VD+ D + L E V + V+ TH HAD I GI L
Sbjct: 47 NTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTL 98
>2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas
quinolone signal, PQS, metall- beta-lactamase, iron,
phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP:
d.157.1.14 PDB: 2q0j_A 3dh8_A*
Length = 303
Score = 36.1 bits (82), Expect = 0.009
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103
G + +V+ G +++ + + L TH H DH + L +
Sbjct: 32 GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQ 91
Query: 104 RPIDVYAAPDCMKHLFESFRYCFKALDDRTY 134
V A+ + +R
Sbjct: 92 ----VLASERTCQAWKSESAVRVVERLNRQL 118
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, NSR435A, DFA5; 1.80A {Nostoc SP}
Length = 262
Score = 35.1 bits (80), Expect = 0.017
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQKR 104
+ T I+D + +M++ E + +D V+ H + I L+
Sbjct: 49 EGDKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFK----ALLELAP 104
Query: 105 PIDVYAAPDCMKHLFESF 122
I + L +F
Sbjct: 105 QITFVCSLPAAGDLRAAF 122
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus}
Length = 207
Score = 34.2 bits (77), Expect = 0.035
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 50 RGSNTTVIVDTGPDF--YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPID 107
V++D G + + + + L A+L TH H DH+ + L + +
Sbjct: 19 ETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVA-----PLVEALDLP 73
Query: 108 VYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMK 153
VY P + +E +A P + +E +
Sbjct: 74 VYLHPLDLPL-YEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQ 118
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET:
GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB:
1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A*
Length = 221
Score = 33.1 bits (75), Expect = 0.066
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 191 PAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVL 250
P+ S E + L+ L+ L + +K + I+ +++DL D L
Sbjct: 1 PSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADD-SL 59
Query: 251 KSTPSRVVPAFDGMQFS 267
TP R+ + FS
Sbjct: 60 METPHRIAKMYVDEIFS 76
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus HB8}
Length = 317
Score = 32.4 bits (72), Expect = 0.11
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 50 RGSNTTVIVDTGPDF---------YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFL 100
+G+ +VDT ++ L + +L TH H DH G
Sbjct: 28 QGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGLGA 87
Query: 101 KQKRPIDVYAAPDCMKHLFESF 122
+ + +A E+F
Sbjct: 88 RVFLHEEEFARGHRFWREPEAF 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 29.9 bits (67), Expect = 0.70
Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 62/152 (40%)
Query: 125 CFKALDD--RTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVA 182
F+ L D +TY +V ++ K + L +
Sbjct: 169 YFEELRDLYQTYHVLVGDLI----------KFSA------ETLS---ELIRT-------- 201
Query: 183 YCTDVNAFPAESLEKL--QNLDFLIIDALKNGLH--SSHFSLSE--SLKKIELINPKNAI 236
EK+ Q L+ I++ L+N + + LS S I +I
Sbjct: 202 ---------TLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----- 245
Query: 237 LTHMHVDLDYDMV----LKSTPSRVVPAFDGM 264
L H Y +V L TP + G
Sbjct: 246 LAH------Y-VVTAKLLGFTPGELRSYLKGA 270
Score = 27.6 bits (61), Expect = 3.2
Identities = 43/260 (16%), Positives = 76/260 (29%), Gaps = 73/260 (28%)
Query: 38 TRSSLKISRVSERGS-NTTVIVDTGPDFYMQVLREQVL-SIDAVLYTHPHADHIHGIDGL 95
TR L +S GS ++V T F L+EQ + D L
Sbjct: 6 TRP-LTLSH----GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 96 --R--GYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIE-NNDVPI 150
+ GY P V + F C+ +D ++ + + +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND------IHALAAKLLQENDT 114
Query: 151 CMKSAGGVI----EAIPILQQ---HGRISSLGFR------------F---GNVAYCTDVN 188
+ +I A + ++ S+L FR F GN
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDY---- 169
Query: 189 AFPAESLEKLQNL---------DFL-IIDALKNGLHSSHFSLSESL--KKIELINPKNAI 236
E+L++L D + + L + +E + + + ++
Sbjct: 170 ------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-AEKVFTQGLNIL----EW 218
Query: 237 LTHMHV--DLDYDMVLKSTP 254
L + D DY L S P
Sbjct: 219 LENPSNTPDKDY---LLSIP 235
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 29.5 bits (65), Expect = 0.82
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 12/83 (14%)
Query: 50 RGSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
++ ++DT + V + + H H D I G+ L+ +
Sbjct: 43 INNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQ------R 96
Query: 104 RPIDVYAAPDCMKHLFESFRYCF 126
+ + YA + E
Sbjct: 97 KGVQSYANQMTIDLAKEKGLPVP 119
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 29.6 bits (65), Expect = 0.87
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 76 IDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYP 135
ID VL TH H DH G+ G+ + + D D+
Sbjct: 101 IDYVLMTHMHFDHAAGLTDQAGHAIFENAIH--VVQQDEWHEFIAPNIRSKSTYWDKNKG 158
Query: 136 PIVNPIVIENNDVPICM 152
N +++
Sbjct: 159 DYSNKLILFEKHFEPVP 175
>2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+
transporting), F1FO, F1- ATPase, hydrolase; HET: ANP;
2.80A {Saccharomyces cerevisiae} PDB: 3fks_H
Length = 138
Score = 28.3 bits (63), Expect = 1.8
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 143 IENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKL--QN 200
+ N VP + GV+E + S GF V A A LE +N
Sbjct: 41 VLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQEN 100
Query: 201 LDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAIL 237
+ L+ +A KN S +E+ ++E++ ++L
Sbjct: 101 IKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSVL 137
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.0
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 45/73 (61%)
Query: 193 ESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVLKS 252
++L+KLQ A SLK ++ D D S
Sbjct: 20 QALKKLQ--------A--------------SLK--------------LYAD-D------S 36
Query: 253 TPSRVVPAFDGMQ 265
P+ + A M+
Sbjct: 37 APALAIKA--TME 47
Score = 28.0 bits (61), Expect = 2.4
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 21/45 (46%)
Query: 36 RRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVL 80
++ ++SLK+ ++ D+ P L+I A +
Sbjct: 23 KKLQASLKL--YAD---------DSAP----------ALAIKATM 46
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center, quorum quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 27.3 bits (59), Expect = 3.3
Identities = 24/182 (13%), Positives = 46/182 (25%), Gaps = 16/182 (8%)
Query: 76 IDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYP 135
I V+ +H H DH G G + A S Y K ++
Sbjct: 104 ISTVVLSHLHNDHA-GCVEYFGKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLAT 162
Query: 136 PIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL--GFRFGNVAYCTDVNAFPAE 193
P +V + G + G + + +D
Sbjct: 163 PRNWDLVGRDERERELAP--GVNLLNFGTGHASGMLGLAVRLEKQPGFLLVSDACYTATN 220
Query: 194 SLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKI-ELINPKNAILTHMHVDLDYDMVLKS 252
A + G+ ++ I + ++ + H + ++KS
Sbjct: 221 ----------YGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDREQFASLIKS 270
Query: 253 TP 254
T
Sbjct: 271 TD 272
>2x65_A Mannose-1-phosphate guanylyltransferase; GDP-mannose biosynthesis,
nucleotidyltransferas; HET: M1P; 2.10A {Thermotoga
maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Length = 336
Score = 26.6 bits (58), Expect = 5.7
Identities = 17/86 (19%), Positives = 28/86 (32%)
Query: 44 ISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
RV E VIV T D+ + +E D + P + +
Sbjct: 41 FERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLADDD 100
Query: 104 RPIDVYAAPDCMKHLFESFRYCFKAL 129
P+ V A + + ++ KAL
Sbjct: 101 EPVLVLPADHRIPDTKKFWKTVKKAL 126
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 26.3 bits (56), Expect = 7.4
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 141 IVIENNDVPICMKSAGGVIEAIPILQQHGRISSLG 175
+++++ DV + M + + + RI ++G
Sbjct: 31 LLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVG 65
>2x5q_A SSO1986; unknown function; 2.05A {Sulfolobus solfataricus}
Length = 198
Score = 26.0 bits (56), Expect = 9.0
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 128 ALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFR-FGNVAYCTD 186
+++ + PI N I E+N+ + G +I Q +S + + N+ T
Sbjct: 7 GWEEQVFLPITNSISSEDNN-----QIKIGSSVSIEYNQNGQHVSQIDDKGLHNILVLTG 61
Query: 187 VNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAIL 237
A + E + D D +K L S K I + + K I+
Sbjct: 62 Y-AIDESTGELVPTFD--PCDYVKGILISGKILKGNHFKIIGIPSNKLYII 109
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.140 0.427
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,492,518
Number of extensions: 115569
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 68
Length of query: 271
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 180
Effective length of database: 3,487,026
Effective search space: 627664680
Effective search space used: 627664680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)