RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter asiaticus str. psy62] (271 letters) >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Length = 293 Score = 219 bits (559), Expect = 5e-58 Identities = 139/267 (52%), Positives = 181/267 (67%), Gaps = 5/267 (1%) Query: 1 MKDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDT 60 ++ FT+LGCG+S GVPRI GDWG CDP NPKNRR R+SL + R G+NT V++DT Sbjct: 29 LR----FTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDT 84 Query: 61 GPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 GPDF MQ++ V +DA +YTHPHADHIHGID LR Y + R +DVYA L++ Sbjct: 85 GPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYD 144 Query: 121 SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGN 180 +F YCF+ +YPPI++ I P ++ AGG I P Q HG I SLGFR G+ Sbjct: 145 TFGYCFETPVGSSYPPILSMHDIAPET-PFSIEGAGGAIRFEPFSQVHGDIESLGFRIGS 203 Query: 181 VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM 240 V YCTDV+AFP +SL+ +++ D LII AL+ H SHFSL E+L+ IE ++PK AILTHM Sbjct: 204 VVYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHM 263 Query: 241 HVDLDYDMVLKSTPSRVVPAFDGMQFS 267 HV LDY+ V++ TP V P +DG++F Sbjct: 264 HVPLDYETVMRETPHHVEPGYDGLRFE 290 >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Length = 321 Score = 154 bits (390), Expect = 2e-38 Identities = 51/308 (16%), Positives = 91/308 (29%), Gaps = 59/308 (19%) Query: 8 TILGCGASLGVPRITGDWGAC----DPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD 63 +LG A G P+ + C D T RT+SS+ + ++ + PD Sbjct: 6 QVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIAL----SDDGVHWILCNASPD 61 Query: 64 FYMQVLREQVL---------SIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 Q+ + I+A++ DH G+ LR + P V+ Sbjct: 62 IRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR-----EGCPHQVWCTDMV 116 Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVP--------ICMKSAGGVIEAIPILQ 166 + L F L N I +E + V P Sbjct: 117 HQDLTTGFPLFNM-LSHWNGGLQWNRIELEGSFVIDACPNLKFTPFPLRSAAPPYSPHRF 175 Query: 167 QHGRISSLGFRF------GNVAYCTDVNAFPAESLEKLQNLDFLIIDAL----------- 209 +LG G + Y + + L + D L++D Sbjct: 176 DPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEMQRRG 235 Query: 210 ------KNGLHSSHFSLSESLKKIELINPKNAILTHMH-----VDLDYDMVLKSTPSRVV 258 + H + +L+ ++ + +L H++ +D + + V Sbjct: 236 VGTRTGREMGHLAQNGPGGTLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLRRGVE 295 Query: 259 PAFDGMQF 266 AFDGM Sbjct: 296 VAFDGMSI 303 >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Length = 267 Score = 125 bits (315), Expect = 1e-29 Identities = 25/228 (10%), Positives = 64/228 (28%), Gaps = 15/228 (6%) Query: 54 TTVIVDTGPD--FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKR--PIDVY 109 +V+ DTG F + + VL +H H DH G+ L G + ++ Y Sbjct: 38 DSVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGKRVWLRKEALDQKY 97 Query: 110 AAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPI----------CMKSAGGVI 159 + + Y + + + ++ Sbjct: 98 SGERYAGADWNEVLYYNTGKFVIERITEIGKNMFLLGPANLRGKVPTGDFFVERNGERRK 157 Query: 160 EAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFS 219 + Q + G ++ + E +++ SS Sbjct: 158 DLFEDEQTLVVRTKEGLVVITGCSHRGIDNILLDIAETFNERIKMVVGGFHLL-KSSDDE 216 Query: 220 LSESLKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVVPAFDGMQFS 267 + + +K + + + H + D+ + +++ + G++ Sbjct: 217 IEKIVKAFNELGVETVVPCHCTGERAVDIFKREFLGKIMDCYAGLKLE 264 >1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast structural genomics consortium, NESG, protein structure initiative; 2.80A {Pseudomonas putida KT2440} SCOP: d.157.1.6 Length = 311 Score = 123 bits (309), Expect = 4e-29 Identities = 52/313 (16%), Positives = 91/313 (29%), Gaps = 67/313 (21%) Query: 8 TILGCGASLGVPRITGDWGAC----DPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD 63 +LG A G P+ + C D T RT+SS+ + ++ + PD Sbjct: 4 QVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIAL----SDDGVHWILCNASPD 59 Query: 64 FYMQVLREQVL---------SIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 Q+ + I+A++ DH G+ LR + P V+ Sbjct: 60 IRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR-----EGCPHQVWCTDMV 114 Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL 174 + L F L N I +E + V A ++ P + Sbjct: 115 HQDLTTGFPLFN-MLSHWNGGLQWNRIELEGSFVI----DACPNLKFTPFPLRSAAPPYS 169 Query: 175 GFRF------------------GNVAYCTDVNAFPAESLEKLQNLDFLIIDALKN----- 211 RF G + Y + + L + D L++D Sbjct: 170 PHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEM 229 Query: 212 ------------GLHSSHFSLSESLKKIELINPKNAILTHM-----HVDLDYDMVLKSTP 254 H + L+ ++ + +L H+ +D + + Sbjct: 230 QRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLR 289 Query: 255 SRVVPAFDGMQFS 267 V AFDGM Sbjct: 290 RGVEVAFDGMSIE 302 >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} Length = 258 Score = 123 bits (308), Expect = 5e-29 Identities = 55/268 (20%), Positives = 92/268 (34%), Gaps = 29/268 (10%) Query: 7 FTILGCGASLGVPRITGDWGACDPT--NPKNRRTRSSLKISRVSERGSNTTVIVDTGPDF 64 T+ G G + GVP + AC +P+ RR S + + ++ ++D G Sbjct: 5 LTLTGTGGAQGVPAWGCECAACARARRSPQYRRQPCSGVV-----KFNDAITLIDAGLHD 59 Query: 65 YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRY 124 R S L TH H DH+ G+ PI VY PD Sbjct: 60 LAD--RWSPGSFQQFLLTHYHMDHVQGLFP---LRWGVGDPIPVYGPPDEQGCDDLFKHP 114 Query: 125 CFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYC 184 LD ++ V + + + VA+ Sbjct: 115 GL--LDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLL----------ETAHSRVAWL 162 Query: 185 TDVNAFPAESLEKLQNLD--FLIIDAL---KNGLHSSHFSLSESLKKIELINPKNAILTH 239 +D P ++L+ L+N +++D + +H L+ L ++I ILTH Sbjct: 163 SDTAGLPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTH 222 Query: 240 MHVDLDYDMVLKSTPSRVVPAFDGMQFS 267 + D ++ + PS FDGM+ Sbjct: 223 ISHQFDAWLMENALPSGFEVGFDGMEIG 250 >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Length = 284 Score = 73.9 bits (180), Expect = 4e-14 Identities = 37/243 (15%), Positives = 67/243 (27%), Gaps = 27/243 (11%) Query: 50 RGSNTTVIVDTGPDF----YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105 + N ++VDTG ++ V I V+ TH H DHI G+ GL + K Sbjct: 39 KKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIY 98 Query: 106 I------DVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDV---PICMKSAG 156 YA + F F + I IE + Sbjct: 99 THKEILNKKYAMRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFYVITNTDITYDN 158 Query: 157 GVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLI----------- 205 +++ G+ F + + + + ++ Sbjct: 159 EFTTKNFFVEKEGKRIPDKFLDEVFVVVKEEDGINVVTGCSHAGILNILETARNRFGVSY 218 Query: 206 IDALKNGLHSSHFS---LSESLKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVVPAFD 262 I +L G H + + +KIE K + H +Y + ++ Sbjct: 219 IKSLIGGFHLRGMEEEKVKDIARKIEEYGVKKVLTGHCTGIDEYGFLKSVLKDKISYLTT 278 Query: 263 GMQ 265 Sbjct: 279 SSS 281 >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Score = 71.3 bits (173), Expect = 2e-13 Identities = 34/282 (12%), Positives = 78/282 (27%), Gaps = 50/282 (17%) Query: 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTG 61 + T++G P+ S ++VD G Sbjct: 22 SNAMKMTVVGFWGGF----------------PEAGEATSGYLF-----EHDGFRLLVDCG 60 Query: 62 PDFYMQVLREQVLS-IDAVLYTHPHADHIHGIDG------LRGYFLKQKRPIDVYAAPDC 114 Q+ + S IDAV+ +H H DH+ I + Q + +Y Sbjct: 61 SGVLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFD 120 Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL 174 + ++ I + + + Sbjct: 121 ENGFHSLTHEPH--------------TKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMR 166 Query: 175 GFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDA----LKNGLHSSHFSLSESLKKIELI 230 ++ + +++ E + ++ D I + + + H + +E + Sbjct: 167 ITAGNDIVVYSADSSYIPEFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASIAKDA 226 Query: 231 NPKNAILTHMHVDLDYDMVL----KSTPSRVVPAFDGMQFSS 268 N K +LTH+ + ++ + + A G ++S Sbjct: 227 NVKELLLTHLPHTGNPADLVTEAKQIFSGHITLAHSGYVWNS 268 >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 Score = 68.6 bits (166), Expect = 1e-12 Identities = 51/322 (15%), Positives = 89/322 (27%), Gaps = 76/322 (23%) Query: 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65 LG GA + P R +S+ + + ER S + D G Sbjct: 2 ELLFLGTGAGI----------------PAKARNVTSVALKLLEERRSV--WLFDCGEATQ 43 Query: 66 MQVLREQV--LSIDAVLYTHPHADHIHGIDGLR-GYFLKQKRPIDVYAAPDCMKHLFESF 122 Q+L + I+ + TH H DH++G+ GL + P +K E+ Sbjct: 44 HQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETS 103 Query: 123 RYCFKAL--DDRTYPPIVNPIVIENNDVPICMKSA------------------------- 155 K I IV E++ + S Sbjct: 104 LAVTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVL 163 Query: 156 ----------------GGVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQ 199 G + +G + G + + E + Sbjct: 164 KEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELAR 223 Query: 200 NLDFLIIDA------LKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVL--- 250 + D ++ +A K H + ++ + K ILTH+ D L Sbjct: 224 DCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQ 283 Query: 251 ---KSTPSRVVPAFDGMQFSSP 269 V A+D ++ + P Sbjct: 284 KEAVDVFPNSVAAYDFLEVNVP 305 >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 Score = 52.8 bits (125), Expect = 8e-08 Identities = 43/320 (13%), Positives = 78/320 (24%), Gaps = 75/320 (23%) Query: 6 HFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65 + LG A + P R +++ + + + + D G Sbjct: 3 NLIFLGTSAGV----------------PTRTRNVTAILL-NLQHPTQSGLWLFDCGEGTQ 45 Query: 66 MQVLREQV--LSIDAVLYTHPHADHIHGID--GLRGYFLKQKRPIDVYAAPDCMKHLFES 121 Q+L +D + +H H DH+ G+ +P+ +Y + + + Sbjct: 46 HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETA 105 Query: 122 FRYCFKAL-----------------DDRTYPPIVNPIVIENNDVPICMKSAGGV------ 158 R R +E I A G Sbjct: 106 LRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQAL 165 Query: 159 ----IEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLD------------ 202 + P+ Q+ ++ G D A P D Sbjct: 166 KAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAK 225 Query: 203 ---------FLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM---HVDLDYDMVL 250 L I H S ++ I+TH+ + D +L Sbjct: 226 GVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLL 285 Query: 251 ---KSTPSRVVPAFDGMQFS 267 +S A D F+ Sbjct: 286 RECRSIFPATELANDFTVFN 305 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Length = 547 Score = 52.6 bits (125), Expect = 9e-08 Identities = 33/225 (14%), Positives = 63/225 (28%), Gaps = 21/225 (9%) Query: 35 NRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQ-VLSIDAVLYTHPHADHIHGID 93 SR R T D + L+E V +D +L TH H+DHI +D Sbjct: 36 EDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVD 95 Query: 94 GL-----RGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNP------IV 142 L +K + + + + + I N Sbjct: 96 ELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQ 155 Query: 143 IENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAFPAESLEKL 198 + D+ + +SL + D++ E Sbjct: 156 FGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLD--NVHGAEDK 213 Query: 199 QNLDFLIIDALKNGLH-SSHFSLSESLKKIELINPKNAILTHMHV 242 +D +K H ++ S ++ I+ ++P + T + Sbjct: 214 YGPLIGKVDLMKFNHHHDTNKSNTK--DFIKNLSPSLIVQTSDSL 256 >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 Score = 49.0 bits (115), Expect = 1e-06 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 4/111 (3%) Query: 56 VIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGL---RGYFLKQKRPIDVYAAP 112 ++ D G L +V + V TH H DHI G+ G+ R + + P Sbjct: 22 ILFDAGEGVSTT-LGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYP 80 Query: 113 DCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIP 163 + + + E + +A D + V+P+ ++ Sbjct: 81 EGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFR 131 >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Length = 360 Score = 47.9 bits (113), Expect = 3e-06 Identities = 30/223 (13%), Positives = 58/223 (26%), Gaps = 12/223 (5%) Query: 28 CDP--TNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPH 85 D K +K +R + + + + IDAVL TH H Sbjct: 60 VDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVLDPFAIRQIDAVLATHDH 119 Query: 86 ADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHL----FESFRYCFKALDDRTYPPIVNPI 141 DHI ++ + C+ R D + Sbjct: 120 NDHI-DVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIH 178 Query: 142 VIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF---GNVAYCTDVNAFPA-ESLEK 197 ++ D + A + + G++ + D + Sbjct: 179 ALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSNYYAKHGN 238 Query: 198 LQNLDFLIIDALKNGLHS-SHFSLSESLKKIELINPKNAILTH 239 +D + +N + ++ L+ E +N K I H Sbjct: 239 EHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKVVIPFH 281 >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 Score = 47.4 bits (112), Expect = 3e-06 Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 23/179 (12%) Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYF----LKQKRP 105 G TV++D G + + +D ++ TH H DHI + L + L + Sbjct: 26 CGEKLTVMIDAGVSNSIADF-SFLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGF 84 Query: 106 IDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPIL 165 + D +K L ES L + +V + G I Sbjct: 85 KKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIY 144 Query: 166 QQHGRISSLGFRFGNVAYCTDV-----------NAFPA-------ESLEKLQNLDFLII 206 + + + D P ESL++ L ++ Sbjct: 145 TPGHARHHMSVLVDDFLFTGDSAGAYFNGVVIPTTPPVIDYKMYMESLKRQIELKPKVV 203 >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Length = 658 Score = 46.3 bits (109), Expect = 8e-06 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 7/90 (7%) Query: 50 RGSNTTVIVDTGPDFY-----MQVLREQV--LSIDAVLYTHPHADHIHGIDGLRGYFLKQ 102 RG + ++VDT +++ ++ I V+Y+H HADH G+ GL Sbjct: 129 RGDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVA 188 Query: 103 KRPIDVYAAPDCMKHLFESFRYCFKALDDR 132 + + A M+ + A+ R Sbjct: 189 SGAVQIIAPAGFMEAAIKENVLAGNAMMRR 218 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Length = 402 Score = 45.9 bits (108), Expect = 9e-06 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 10/76 (13%) Query: 55 TVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDV 108 T + DT Y L + S ID ++ H DH + ++ +P + Sbjct: 45 TTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGAL----PALIEACQPEKI 100 Query: 109 YAAPDCMKHLFESFRY 124 + + K + F Y Sbjct: 101 FTSSLGQKAMESHFHY 116 >2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase fold, structural genomics, NPPSFA; HET: FLC; 2.50A {Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Score = 45.7 bits (107), Expect = 1e-05 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%) Query: 53 NTTVIVDTGPDF------YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPI 106 V++D G +DAVL TH H DH+ + ++ Sbjct: 23 GRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLP----KLFREGYRG 78 Query: 107 DVYAAPDCMKHLFESFRYCFKALDDRTYPP 136 VYA + + K +D+ + P Sbjct: 79 PVYATRATVLLMEIVLEDALKVMDEPFFGP 108 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Score = 45.3 bits (107), Expect = 1e-05 Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 10/118 (8%) Query: 47 VSERGSNTTVIVDTGPDF--YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104 + + +VD G D Q + +++ +L TH H DH+ L ++ Sbjct: 18 IWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHY----- 72 Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAI 162 + V + + + P+ + + D + ++ + Sbjct: 73 GVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGD---RVSVGNVTLQVL 127 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 Score = 45.1 bits (106), Expect = 2e-05 Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 10/83 (12%) Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQKR 104 ++D+ + + ++ + I V+ H DH + + Sbjct: 47 DDECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSL----KDHYHKFT 102 Query: 105 PIDVYAAPDCMKHLFESFRYCFK 127 C +HL + Sbjct: 103 NATFVCTKKCQEHLKILYGMEKA 125 >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 Score = 45.1 bits (106), Expect = 2e-05 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%) Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103 G + +V+ G +++ + + L TH H DH + Y + Sbjct: 32 GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLL----PYLCPRL 87 Query: 104 RPIDVYAAPDCMKHL 118 + V A+ + Sbjct: 88 PNVQVLASERTCQAW 102 >2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Length = 230 Score = 44.2 bits (104), Expect = 3e-05 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 50 RGSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103 R + +++DT ++ ++ L + + TH H D + G+D LR Sbjct: 44 RDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR------A 97 Query: 104 RPIDVYAAPDCMKHLFESFRYCF 126 + YA+P + Sbjct: 98 AGVATYASPSTRRLAEAEGNEIP 120 >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Length = 260 Score = 44.0 bits (103), Expect = 3e-05 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 1/72 (1%) Query: 47 VSERGSNTTVIVDTG-PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105 V + + IVD P + R+ + + VL TH H DH G + L K Sbjct: 17 VIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVY 76 Query: 106 IDVYAAPDCMKH 117 Sbjct: 77 GGDDRIGALTHK 88 >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 Score = 43.7 bits (102), Expect = 5e-05 Identities = 9/105 (8%), Positives = 34/105 (32%), Gaps = 12/105 (11%) Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQ 102 +++++ + + +++ + +L +H H DH G + ++ Sbjct: 31 VTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQT--- 87 Query: 103 KRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENND 147 + + + + F +D + + + +D Sbjct: 88 --KAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHD 130 >1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1ko2_A Length = 230 Score = 42.9 bits (100), Expect = 7e-05 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 12/82 (14%) Query: 50 RGSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103 R + +++DT ++ ++ L + + TH H D + G+D LR Sbjct: 44 RDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR------A 97 Query: 104 RPIDVYAAPDCMKHLFESFRYC 125 + YA+P + Sbjct: 98 AGVATYASPSTRRLAEVEGNEI 119 >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Length = 379 Score = 42.4 bits (99), Expect = 1e-04 Identities = 30/180 (16%), Positives = 60/180 (33%), Gaps = 13/180 (7%) Query: 71 EQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESF-----RYC 125 + IDAVL +H HADHI L+ + P L+ + R Sbjct: 129 FAIKEIDAVLASHDHADHIDVNVAA--AVLQNCGEHVKFIGPQACVDLWLGWGVPQERCI 186 Query: 126 FKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRF----GNV 181 + D V V+++ D + GV + ++ + G+V Sbjct: 187 VAKVGDVLEIGDVKIRVLDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIETSGGSV 246 Query: 182 AYCTDVNAFPA-ESLEKLQNLDFLIIDALKNGL-HSSHFSLSESLKKIELINPKNAILTH 239 + D + +D ++ +N + + S+ L+ E ++ + + H Sbjct: 247 YHSGDSHYSNYYAKHGNDYQIDVALLSYGENPRGVTDKMTSSDVLRAAESLDCQVVVPFH 306 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 Score = 42.0 bits (98), Expect = 1e-04 Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 9/79 (11%) Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103 + + V++D Y + + + I ++ H DH + Sbjct: 58 KLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTI---G 114 Query: 104 RPIDVYAAPDCMKHLFESF 122 +++ A+ + L + Sbjct: 115 HDVEIIASNFGKRLLEGFY 133 >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 Score = 41.7 bits (97), Expect = 2e-04 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 51 GSNTTVIVDTGPDF-----YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105 + ++DT + E+ I + +H H+D GI+ L R Sbjct: 40 VNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLN------SRS 93 Query: 106 IDVYAAPDCMKHLFESFRYCFKALDDRTY 134 I YA+ + L + + Sbjct: 94 IPTYASELTNELLKKDGKVQATNSFSGVN 122 >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Length = 311 Score = 41.9 bits (97), Expect = 2e-04 Identities = 26/204 (12%), Positives = 56/204 (27%), Gaps = 19/204 (9%) Query: 47 VSERGSNTTVIVDTGPDF--YMQVLREQV---------LSIDAVLYTHPHADHIHGIDGL 95 +++ ++T VD D+ + + E + + +L TH H DH G L Sbjct: 45 INDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKL 104 Query: 96 RGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSA 155 + + +S K + + + + V + Sbjct: 105 KAELEAMNS----TVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHV 160 Query: 156 GGVIEAIPILQQHGRISSLGFRFGNVAYCTDV--NAFPAESLEKLQNLDFLIIDALKN-- 211 ++ + + F ++EK+ ++ AL Sbjct: 161 LYKVQHPQHPNDGVALFTGDTMFIAGIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVT 220 Query: 212 GLHSSHFSLSESLKKIELINPKNA 235 + H S + E P A Sbjct: 221 FIFPGHEYTSGFMTFSEKTFPDRA 244 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Length = 404 Score = 41.7 bits (97), Expect = 2e-04 Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 13/82 (15%) Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS---------IDAVLYTHPHADHIHGIDGLRGYFL 100 G ++D L +V +D ++ H DH + Sbjct: 41 CGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLV----ELH 96 Query: 101 KQKRPIDVYAAPDCMKHLFESF 122 ++ +Y +K L + + Sbjct: 97 RRFPEAPIYCTEVAVKGLLKHY 118 >3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Length = 235 Score = 41.7 bits (97), Expect = 2e-04 Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 27/192 (14%) Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVY 109 N ++ VD ++ D +L TH H DH+ + +K ++ Sbjct: 43 TYDNHSIQVDPVSEYADY---TTFPKADIILITHEHGDHLD----PKAIQAVEKSDTEII 95 Query: 110 AAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHG 169 A + K L + + + I A Sbjct: 96 ANENSQKKL------------GKGKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRH 143 Query: 170 RISSLGFRFGN--VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKI 227 R + F V D P ++ L+++D + + ++S++ K Sbjct: 144 RDNGYILTFDGLRVYIAGDTEDIP--EMKDLKDIDIAFLPVNQPY----TMTVSQAAKAA 197 Query: 228 ELINPKNAILTH 239 + +PK H Sbjct: 198 RMFSPKILYPYH 209 >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Score = 41.2 bits (95), Expect = 2e-04 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 20/137 (14%) Query: 53 NTTVIVDTGPDFYMQVLRE-------QVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRP 105 +++D G ++ + ID +L +H H DH + + R Sbjct: 34 GRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRT 93 Query: 106 IDVYAAPDCMKHLFESFRYC---------FKALDDRTYPPIVNPI----VIENNDVPICM 152 +A + L + + D + I V E + Sbjct: 94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWC 153 Query: 153 KSAGGVIEAIPILQQHG 169 AG V+ A + + Sbjct: 154 YHAGHVLGAAMFMIEIA 170 >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Length = 562 Score = 41.0 bits (95), Expect = 3e-04 Identities = 32/186 (17%), Positives = 52/186 (27%), Gaps = 31/186 (16%) Query: 53 NTTVIVDTG---------------PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRG 97 + ++D G P L E I A + TH H DHI G+ L Sbjct: 39 DEIFVLDGGLAFPEEGMPGVDLLIPRV--DYLIEHRHKIKAWVLTHGHEDHIGGLPFLLP 96 Query: 98 YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGG 157 ++ P+ +Y A + L + P N I +D G Sbjct: 97 MIFGKESPVPIYGARLTLGLLRGKLE------EFGLRPGAFNLKEISPDD----RIQVGR 146 Query: 158 VIEAIPILQQHGRISSLGFRF----GNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGL 213 H + G G + + D P K+ +L + + L Sbjct: 147 YFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVL 206 Query: 214 HSSHFS 219 + Sbjct: 207 LLIADA 212 >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Length = 219 Score = 41.1 bits (96), Expect = 3e-04 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 12/82 (14%) Query: 51 GSNTTVIVDTGPD-FYMQVLREQV-----LSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104 V+ D + Q L + + L + AV TH H D + + Sbjct: 38 TKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFN------NK 91 Query: 105 PIDVYAAPDCMKHLFESFRYCF 126 I YA + L + + Sbjct: 92 GIKTYATAKTNEFLKKDGKATS 113 >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Length = 227 Score = 40.8 bits (95), Expect = 4e-04 Identities = 23/172 (13%), Positives = 44/172 (25%), Gaps = 25/172 (14%) Query: 51 GSNTTVIVDTGPD-FYMQVLREQVLS-----IDAVLYTHPHADHIHGIDGLRGYFLKQKR 104 G+ +V + L + + + V+ T+ H D G + K Sbjct: 30 GAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVS 89 Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPI 164 E + K L + P+V P V+ + D G + A Sbjct: 90 TRQTRDLMKSDWA--EIVAFTRKGLPEYPDLPLVLPNVVHDGD----FTLQEGKVRAFYA 143 Query: 165 LQQHGRISSLGFRFGNVAYCTDVNAFP-------------AESLEKLQNLDF 203 H + ++LE+L+ + Sbjct: 144 GPAHTPDGIFVYFPDEQVLYGGCILKEKLGNLSFADVKAYPQTLERLKAMKL 195 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Length = 429 Score = 40.0 bits (92), Expect = 6e-04 Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 10/129 (7%) Query: 57 IVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMK 116 + D + ++ AV +H H DH I Y + + Sbjct: 66 LYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMI----NYLDPAVPLYTLKETKMILN 121 Query: 117 HLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGF 176 L + + + + +N+ + + G I + H + Sbjct: 122 SLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKV------GEISVEIVPVDHDAYGASAL 175 Query: 177 RFGNVAYCT 185 + Sbjct: 176 LIRTPDHFI 184 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 Score = 39.8 bits (92), Expect = 6e-04 Identities = 29/220 (13%), Positives = 64/220 (29%), Gaps = 34/220 (15%) Query: 51 GSNTTVIVDTGPDFYMQVLREQV------LSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104 + T +VDT + + + L ++ + +D ++ H +DH G ++ Sbjct: 42 VDDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHA----GAFPAIMELCP 97 Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPI 164 V L Y I I + + P+ Sbjct: 98 DAHVLCTQRAFDSLKAH------------YSHIDFNYTIVKTGTSVSLGKRSLTFIEAPM 145 Query: 165 LQQHGRISSLGFRFGNVAYCTDVNAF---PAESLEKLQNLDFLIIDALK---NGLHSSHF 218 L + D + + + ++ +A K N L Sbjct: 146 LHWPD-SMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPFSN 204 Query: 219 SLSESLKKIELINPKNAILTHMHVDLDYDMVLKSTPSRVV 258 +++ L +I+ IN + H ++ + P R++ Sbjct: 205 LITKKLDEIQKINLAIKTIAPSH-----GIIWRKDPGRII 239 >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 Score = 39.8 bits (92), Expect = 7e-04 Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 12/105 (11%) Query: 51 GSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKR 104 V++D F ++ ++ + + TH H D G++ K Sbjct: 34 TDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFG------KI 87 Query: 105 PIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVP 149 Y+ L + + + D V + Sbjct: 88 GAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPG 132 >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Score = 39.7 bits (92), Expect = 8e-04 Identities = 26/211 (12%), Positives = 56/211 (26%), Gaps = 35/211 (16%) Query: 53 NTTVIVDTG-------PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGL-RGYFLKQKR 104 N T+++D G + ++ + + ID ++ + P + + L + Sbjct: 24 NVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFIS 83 Query: 105 PIDVYAAP-----------DCMK--HLFESFRYCFKALDD--RTYPPIVN-------PIV 142 I VYA D + + L+D ++ IV + Sbjct: 84 RIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLR 143 Query: 143 IENNDVPICMKSAGGVIEAIPILQQHGRIS-----SLGFRFGNVAYCTDVNAFPAESLEK 197 + + + +AG N+ + + L Sbjct: 144 SRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLST 203 Query: 198 LQNLDFLIIDALKNGLHSSHFSLSESLKKIE 228 L +I + G S+ K Sbjct: 204 LMRPSAIITTLDRFGSSQPFKKRSKIFKDTL 234 >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Length = 331 Score = 39.1 bits (90), Expect = 0.001 Identities = 16/115 (13%), Positives = 33/115 (28%), Gaps = 17/115 (14%) Query: 50 RGSNTTVIVDTGPDFYMQVLREQVLS-----------IDAVLYTHPHADHIHGIDGLRG- 97 + V+VDTG ++ + +D + TH H DH+ G+ Sbjct: 103 NTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQL 162 Query: 98 -----YFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENND 147 ++ D + + + + F + P V + Sbjct: 163 AFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFS 217 >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Length = 246 Score = 38.4 bits (88), Expect = 0.002 Identities = 23/199 (11%), Positives = 56/199 (28%), Gaps = 17/199 (8%) Query: 47 VSERGSNTTVIVDTG-PDFYMQVLREQVLSID-----AVLYTHPHADHIHGIDGLRGYFL 100 V++ T VIV + + Q L + V + TH H D G + + Sbjct: 34 VAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMG- 92 Query: 101 KQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIE 160 + +++ + E + + + ++ ++ VP + Sbjct: 93 -----AETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGK 147 Query: 161 AIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSL 220 + +S G + L ++ + Sbjct: 148 VFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLL-----FGGCMIKPKELGYLGDANVKAW 202 Query: 221 SESLKKIELINPKNAILTH 239 +S ++++ + K I H Sbjct: 203 PDSARRLKKFDAKIVIPGH 221 >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Score = 38.5 bits (89), Expect = 0.002 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 4/38 (10%) Query: 75 SIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAP 112 IDAV+ TH H DH GL K VY P Sbjct: 237 QIDAVIVTHAHLDHQ----GLVPLLFKYGYEGPVYCTP 270 >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Score = 37.0 bits (85), Expect = 0.004 Identities = 38/206 (18%), Positives = 64/206 (31%), Gaps = 35/206 (16%) Query: 53 NTTVIVDTGPDFYMQVLREQVL---------------SIDAVLYTHPHADHIHGIDGLRG 97 + V+VD G + M + +DA++ TH H DH G+ Sbjct: 211 ESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHC----GMLP 266 Query: 98 YFLKQKRP-IDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAG 156 Y + +Y P + + + P+ P I+ G Sbjct: 267 YLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYG 326 Query: 157 GVIEAIP--ILQQHGRISSLGFRF---------GNVAYCTDVNAFPAESLE----KLQNL 201 V + P L H LG N+A D P LE K L Sbjct: 327 EVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRL 386 Query: 202 DFLIIDALKNGLHSSHFSLSESLKKI 227 + L++++ G + E+ K++ Sbjct: 387 ETLVMESTYGGANDIQMPREEAEKRL 412 >1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 Score = 37.2 bits (85), Expect = 0.004 Identities = 22/135 (16%), Positives = 35/135 (25%), Gaps = 26/135 (19%) Query: 7 FTILGCGASLGVP-RITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFY 65 IL G ++ VP R+ + V + +I+D G Sbjct: 15 LKILVTGGNVFVPGRLNAHFSTV------------------VYLEHKDRRIIIDPGNLSS 56 Query: 66 MQVLREQV-------LSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHL 118 M L E+ I VL+TH H DHI + Sbjct: 57 MDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNYLSFGTIV 116 Query: 119 FESFRYCFKALDDRT 133 + + + Sbjct: 117 GRIYSKVISSWKNVV 131 >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Length = 227 Score = 36.0 bits (82), Expect = 0.009 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 50 RGSNTTVIVDTGPD-FYMQVLREQV-----LSIDAVLYTHPHADHIHGIDGL 95 S V+VD+ D + L E V + V+ TH HAD I GI L Sbjct: 47 NTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTL 98 >2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas quinolone signal, PQS, metall- beta-lactamase, iron, phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP: d.157.1.14 PDB: 2q0j_A 3dh8_A* Length = 303 Score = 36.1 bits (82), Expect = 0.009 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 11/91 (12%) Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS-------IDAVLYTHPHADHIHGIDGLRGYFLKQK 103 G + +V+ G +++ + + L TH H DH + L + Sbjct: 32 GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQ 91 Query: 104 RPIDVYAAPDCMKHLFESFRYCFKALDDRTY 134 V A+ + +R Sbjct: 92 ----VLASERTCQAWKSESAVRVVERLNRQL 118 >3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Length = 262 Score = 35.1 bits (80), Expect = 0.017 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 10/78 (12%) Query: 51 GSNTTVIVDTGPDFYMQVLREQVLS------IDAVLYTHPHADHIHGIDGLRGYFLKQKR 104 + T I+D + +M++ E + +D V+ H + I L+ Sbjct: 49 EGDKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFK----ALLELAP 104 Query: 105 PIDVYAAPDCMKHLFESF 122 I + L +F Sbjct: 105 QITFVCSLPAAGDLRAAF 122 >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} Length = 207 Score = 34.2 bits (77), Expect = 0.035 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 8/106 (7%) Query: 50 RGSNTTVIVDTGPDF--YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPID 107 V++D G + + + + L A+L TH H DH+ + L + + Sbjct: 19 ETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVA-----PLVEALDLP 73 Query: 108 VYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMK 153 VY P + +E +A P + +E + Sbjct: 74 VYLHPLDLPL-YEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQ 118 >1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* Length = 221 Score = 33.1 bits (75), Expect = 0.066 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Query: 191 PAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVL 250 P+ S E + L+ L+ L + +K + I+ +++DL D L Sbjct: 1 PSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHMTEIMQLLNLDLADD-SL 59 Query: 251 KSTPSRVVPAFDGMQFS 267 TP R+ + FS Sbjct: 60 METPHRIAKMYVDEIFS 76 >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Length = 317 Score = 32.4 bits (72), Expect = 0.11 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 9/82 (10%) Query: 50 RGSNTTVIVDTGPDF---------YMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFL 100 +G+ +VDT ++ L + +L TH H DH G Sbjct: 28 QGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGLGA 87 Query: 101 KQKRPIDVYAAPDCMKHLFESF 122 + + +A E+F Sbjct: 88 RVFLHEEEFARGHRFWREPEAF 109 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 29.9 bits (67), Expect = 0.70 Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 62/152 (40%) Query: 125 CFKALDD--RTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVA 182 F+ L D +TY +V ++ K + L + Sbjct: 169 YFEELRDLYQTYHVLVGDLI----------KFSA------ETLS---ELIRT-------- 201 Query: 183 YCTDVNAFPAESLEKL--QNLDFLIIDALKNGLH--SSHFSLSE--SLKKIELINPKNAI 236 EK+ Q L+ I++ L+N + + LS S I +I Sbjct: 202 ---------TLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----- 245 Query: 237 LTHMHVDLDYDMV----LKSTPSRVVPAFDGM 264 L H Y +V L TP + G Sbjct: 246 LAH------Y-VVTAKLLGFTPGELRSYLKGA 270 Score = 27.6 bits (61), Expect = 3.2 Identities = 43/260 (16%), Positives = 76/260 (29%), Gaps = 73/260 (28%) Query: 38 TRSSLKISRVSERGS-NTTVIVDTGPDFYMQVLREQVL-SIDAVLYTHPHADHIHGIDGL 95 TR L +S GS ++V T F L+EQ + D L Sbjct: 6 TRP-LTLSH----GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60 Query: 96 --R--GYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIE-NNDVPI 150 + GY P V + F C+ +D ++ + + + Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND------IHALAAKLLQENDT 114 Query: 151 CMKSAGGVI----EAIPILQQ---HGRISSLGFR------------F---GNVAYCTDVN 188 + +I A + ++ S+L FR F GN Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDY---- 169 Query: 189 AFPAESLEKLQNL---------DFL-IIDALKNGLHSSHFSLSESL--KKIELINPKNAI 236 E+L++L D + + L + +E + + + ++ Sbjct: 170 ------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-AEKVFTQGLNIL----EW 218 Query: 237 LTHMHV--DLDYDMVLKSTP 254 L + D DY L S P Sbjct: 219 LENPSNTPDKDY---LLSIP 235 >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Length = 232 Score = 29.5 bits (65), Expect = 0.82 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 12/83 (14%) Query: 50 RGSNTTVIVDTGPD------FYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103 ++ ++DT + V + + H H D I G+ L+ + Sbjct: 43 INNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQ------R 96 Query: 104 RPIDVYAAPDCMKHLFESFRYCF 126 + + YA + E Sbjct: 97 KGVQSYANQMTIDLAKEKGLPVP 119 >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 280 Score = 29.6 bits (65), Expect = 0.87 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 2/77 (2%) Query: 76 IDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYP 135 ID VL TH H DH G+ G+ + + D D+ Sbjct: 101 IDYVLMTHMHFDHAAGLTDQAGHAIFENAIH--VVQQDEWHEFIAPNIRSKSTYWDKNKG 158 Query: 136 PIVNPIVIENNDVPICM 152 N +++ Sbjct: 159 DYSNKLILFEKHFEPVP 175 >2hld_H ATP synthase delta chain, mitochondrial; ATP phosphorylase (H+ transporting), F1FO, F1- ATPase, hydrolase; HET: ANP; 2.80A {Saccharomyces cerevisiae} PDB: 3fks_H Length = 138 Score = 28.3 bits (63), Expect = 1.8 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Query: 143 IENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKL--QN 200 + N VP + GV+E + S GF V A A LE +N Sbjct: 41 VLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAFPLESFSQEN 100 Query: 201 LDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAIL 237 + L+ +A KN S +E+ ++E++ ++L Sbjct: 101 IKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSVL 137 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.0 bits (61), Expect = 2.0 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 45/73 (61%) Query: 193 ESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMHVDLDYDMVLKS 252 ++L+KLQ A SLK ++ D D S Sbjct: 20 QALKKLQ--------A--------------SLK--------------LYAD-D------S 36 Query: 253 TPSRVVPAFDGMQ 265 P+ + A M+ Sbjct: 37 APALAIKA--TME 47 Score = 28.0 bits (61), Expect = 2.4 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 21/45 (46%) Query: 36 RRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVL 80 ++ ++SLK+ ++ D+ P L+I A + Sbjct: 23 KKLQASLKL--YAD---------DSAP----------ALAIKATM 46 >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Length = 276 Score = 27.3 bits (59), Expect = 3.3 Identities = 24/182 (13%), Positives = 46/182 (25%), Gaps = 16/182 (8%) Query: 76 IDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYP 135 I V+ +H H DH G G + A S Y K ++ Sbjct: 104 ISTVVLSHLHNDHA-GCVEYFGKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLAT 162 Query: 136 PIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL--GFRFGNVAYCTDVNAFPAE 193 P +V + G + G + + +D Sbjct: 163 PRNWDLVGRDERERELAP--GVNLLNFGTGHASGMLGLAVRLEKQPGFLLVSDACYTATN 220 Query: 194 SLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKI-ELINPKNAILTHMHVDLDYDMVLKS 252 A + G+ ++ I + ++ + H + ++KS Sbjct: 221 ----------YGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDREQFASLIKS 270 Query: 253 TP 254 T Sbjct: 271 TD 272 >2x65_A Mannose-1-phosphate guanylyltransferase; GDP-mannose biosynthesis, nucleotidyltransferas; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* Length = 336 Score = 26.6 bits (58), Expect = 5.7 Identities = 17/86 (19%), Positives = 28/86 (32%) Query: 44 ISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103 RV E VIV T D+ + +E D + P + + Sbjct: 41 FERVLEEMDPKDVIVVTHKDYVERTKKELPELPDENIIAEPMKKNTAPACFIGTKLADDD 100 Query: 104 RPIDVYAAPDCMKHLFESFRYCFKAL 129 P+ V A + + ++ KAL Sbjct: 101 EPVLVLPADHRIPDTKKFWKTVKKAL 126 >3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} PDB: 3hpa_A Length = 479 Score = 26.3 bits (56), Expect = 7.4 Identities = 6/35 (17%), Positives = 17/35 (48%) Query: 141 IVIENNDVPICMKSAGGVIEAIPILQQHGRISSLG 175 +++++ DV + M + + + RI ++G Sbjct: 31 LLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVG 65 >2x5q_A SSO1986; unknown function; 2.05A {Sulfolobus solfataricus} Length = 198 Score = 26.0 bits (56), Expect = 9.0 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 9/111 (8%) Query: 128 ALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFR-FGNVAYCTD 186 +++ + PI N I E+N+ + G +I Q +S + + N+ T Sbjct: 7 GWEEQVFLPITNSISSEDNN-----QIKIGSSVSIEYNQNGQHVSQIDDKGLHNILVLTG 61 Query: 187 VNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAIL 237 A + E + D D +K L S K I + + K I+ Sbjct: 62 Y-AIDESTGELVPTFD--PCDYVKGILISGKILKGNHFKIIGIPSNKLYII 109 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.140 0.427 Gapped Lambda K H 0.267 0.0447 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,492,518 Number of extensions: 115569 Number of successful extensions: 370 Number of sequences better than 10.0: 1 Number of HSP's gapped: 326 Number of HSP's successfully gapped: 68 Length of query: 271 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 180 Effective length of database: 3,487,026 Effective search space: 627664680 Effective search space used: 627664680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (26.1 bits)