BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (271 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 271

 Score =  563 bits (1451), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MKDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDT 60
           MKDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDT
Sbjct: 1   MKDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDT 60

Query: 61  GPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120
           GPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE
Sbjct: 61  GPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120

Query: 121 SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGN 180
           SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGN
Sbjct: 121 SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGN 180

Query: 181 VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM 240
           VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM
Sbjct: 181 VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM 240

Query: 241 HVDLDYDMVLKSTPSRVVPAFDGMQFSSPIP 271
           HVDLDYDMVLKSTPSRVVPAFDGMQFSSPIP
Sbjct: 241 HVDLDYDMVLKSTPSRVVPAFDGMQFSSPIP 271


>gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 256

 Score = 26.6 bits (57), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 55 TVIVDTGPDFYM--QVLREQVLSIDAVLYTHPHADHIHGIDGLRGYF 99
          T  +D  PD Y+  ++LRE+   +  +  TH H DH      L+ +F
Sbjct: 27 TAAID-APDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72



 Score = 23.9 bits (50), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 19/51 (37%)

Query: 93  DGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVI 143
           D    YF  +    + Y A  C  H  E  +YC K    R+     NP  I
Sbjct: 163 DKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTI 213


>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 216

 Score = 25.8 bits (55), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 55 TVIVDTGPDFYM--QVLREQVLSIDAVLYTHPHADHIHGIDGLR 96
           V+VD G D  +   V++ +   +  +  TH H DH+ G   L+
Sbjct: 29 AVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGAAQLK 72


>gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 273

 Score = 25.0 bits (53), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 67  QVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPI 106
           +V +E    ++ +  T  +A  +HGI G+ GY   + + I
Sbjct: 31  RVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKI 70


>gi|254780401|ref|YP_003064814.1| tetraacyldisaccharide 4'-kinase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 338

 Score = 24.3 bits (51), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 48  SERGSNTTVIVDTGPDFYMQV-LREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQK 103
           S RG    ++   GP   ++V L  Q+  +DA+LY     + I  I     YF K K
Sbjct: 160 SHRGLGNGLVFPAGP---LRVPLSRQLSYVDAILYVGNKKNVISSIKNKSVYFAKLK 213


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,223
Number of Sequences: 1233
Number of extensions: 7244
Number of successful extensions: 15
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 271
length of database: 328,796
effective HSP length: 73
effective length of query: 198
effective length of database: 238,787
effective search space: 47279826
effective search space used: 47279826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)