HHsearch alignment for GI: 254780215 and conserved domain: COG4464
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=96.27 E-value=0.053 Score=34.03 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=90.0
Q ss_pred EEEEECCCC----C-HHHHCCHHHHHHHHHHCCCCEEEEECCCHH-----HHHH----HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 168613888----7-565226899999999869989999167987-----7899----9999985572332112445443
Q gi|254780215|r 2 LIDTHCHLL----L-PDFDEDRHDVIMRAHQANVLKMIAIAIKVK-----DFVP----LIKLCQDYPSSIFCSVGTHPCH 67 (262)
Q Consensus 2 ~iD~H~HL~----~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~-----~~~~----~~~l~~~~p~~i~~a~GiHP~~ 67 (262)
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~-~~~aidl~v~pGQ 79 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEIL-KKEAIDLKVLPGQ 79 (254)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEECCCC
T ss_conf 945013466787889875899999999999757607951333247766891999999999999888-8626782661686
Q ss_pred CCCCCHHHHHHHHHH----CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHH
Q ss_conf 344678899885310----013332100446775533221110246789999876642044203300-023335799985
Q gi|254780215|r 68 AHEENEVLVDELVCL----ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQ 142 (262)
Q Consensus 68 ~~~~~~~~~~~l~~l----~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~ 142 (262)
T Consensus 80 EIrIt~~vl~~l~~g~I~tindskYlLI-EF~~----~~v~~ya~~lf~elq~k----Gi~PIIAHPERn---------- 140 (254)
T COG4464 80 EIRITGDVLDDLDKGIILTINDSKYLLI-EFPM----NHVPRYADQLFFELQSK----GIIPIIAHPERN---------- 140 (254)
T ss_pred EEEECHHHHHHHHCCCCCCCCCCCEEEE-ECCC----CCCHHHHHHHHHHHHHC----CCEEEEECHHHH----------
T ss_conf 6897508887876284340336634999-7468----86224599999999977----950366462567----------
Q ss_pred HHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCC-CCC--HHHHHHHHHHHHC---CCCCCEEEEECCCCCCCCCCCC
Q ss_conf 310003675331121464023443210352020233-221--1333223333210---5667179830786678777688
Q gi|254780215|r 143 EEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG-MIT--FPKYDALRAIARG---IPMDRVLVETDSPYIVPVSCQG 216 (262)
Q Consensus 143 ~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g-~i~--~~~~~~~~e~v~~---iPldriLlETDsP~l~p~~~r~ 216 (262)
T Consensus 141 ------------~~i~kn~~~lyeLid~ga~sQvts~Sl~GlfGK--~ikK~a~~~iE~~L~h-FiASDAHn~------~ 199 (254)
T COG4464 141 ------------RAIQKNPYLLYELIDKGAYSQVTSSSLAGLFGK--KIKKFALQLIEANLVH-FIASDAHNV------D 199 (254)
T ss_pred ------------HHHHHCHHHHHHHHHCCCCEEECHHHHHHHHHH--HHHHHHHHHHHCCCCE-EEECCCCCC------C
T ss_conf ------------888859699999985562214225767766658--8999999999746312-540334335------7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 75882449999999998728998999999999999984
Q gi|254780215|r 217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254 (262)
Q Consensus 217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f 254 (262)
T Consensus 200 ~R--~f~~~ea~~~~~k---~~gs~~~~~fi~Na~llv 232 (254)
T COG4464 200 KR--PFHMQEAFHLVTK---KDGSELPEKFIENAELLV 232 (254)
T ss_pred CC--CCCHHHHHHHHHH---HHHHHHHHHHHHCHHHHH
T ss_conf 88--9338999999987---663433899875789874