HHsearch alignment for GI: 254780215 and conserved domain: COG4464

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=96.27  E-value=0.053  Score=34.03  Aligned_cols=207  Identities=19%  Similarity=0.237  Sum_probs=90.0

Q ss_pred             EEEEECCCC----C-HHHHCCHHHHHHHHHHCCCCEEEEECCCHH-----HHHH----HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             168613888----7-565226899999999869989999167987-----7899----9999985572332112445443
Q gi|254780215|r    2 LIDTHCHLL----L-PDFDEDRHDVIMRAHQANVLKMIAIAIKVK-----DFVP----LIKLCQDYPSSIFCSVGTHPCH   67 (262)
Q Consensus         2 ~iD~H~HL~----~-~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~-----~~~~----~~~l~~~~p~~i~~a~GiHP~~   67 (262)
T Consensus         1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~-~~~aidl~v~pGQ   79 (254)
T COG4464           1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEIL-KKEAIDLKVLPGQ   79 (254)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCCEECCCC
T ss_conf             945013466787889875899999999999757607951333247766891999999999999888-8626782661686


Q ss_pred             CCCCCHHHHHHHHHH----CCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEC-HHHHHHHHHHHH
Q ss_conf             344678899885310----013332100446775533221110246789999876642044203300-023335799985
Q gi|254780215|r   68 AHEENEVLVDELVCL----ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHS-RSADDDMAAILQ  142 (262)
Q Consensus        68 ~~~~~~~~~~~l~~l----~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~-r~a~~~~l~iL~  142 (262)
T Consensus        80 EIrIt~~vl~~l~~g~I~tindskYlLI-EF~~----~~v~~ya~~lf~elq~k----Gi~PIIAHPERn----------  140 (254)
T COG4464          80 EIRITGDVLDDLDKGIILTINDSKYLLI-EFPM----NHVPRYADQLFFELQSK----GIIPIIAHPERN----------  140 (254)
T ss_pred             EEEECHHHHHHHHCCCCCCCCCCCEEEE-ECCC----CCCHHHHHHHHHHHHHC----CCEEEEECHHHH----------
T ss_conf             6897508887876284340336634999-7468----86224599999999977----950366462567----------


Q ss_pred             HHHHCCCCCCCCEECCCCHHHHHHHHCCCCEEECCC-CCC--HHHHHHHHHHHHC---CCCCCEEEEECCCCCCCCCCCC
Q ss_conf             310003675331121464023443210352020233-221--1333223333210---5667179830786678777688
Q gi|254780215|r  143 EEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG-MIT--FPKYDALRAIARG---IPMDRVLVETDSPYIVPVSCQG  216 (262)
Q Consensus       143 ~~~~~~~~~~i~H~FsG~~~~~~~~l~~g~y~S~~g-~i~--~~~~~~~~e~v~~---iPldriLlETDsP~l~p~~~r~  216 (262)
T Consensus       141 ------------~~i~kn~~~lyeLid~ga~sQvts~Sl~GlfGK--~ikK~a~~~iE~~L~h-FiASDAHn~------~  199 (254)
T COG4464         141 ------------RAIQKNPYLLYELIDKGAYSQVTSSSLAGLFGK--KIKKFALQLIEANLVH-FIASDAHNV------D  199 (254)
T ss_pred             ------------HHHHHCHHHHHHHHHCCCCEEECHHHHHHHHHH--HHHHHHHHHHHCCCCE-EEECCCCCC------C
T ss_conf             ------------888859699999985562214225767766658--8999999999746312-540334335------7


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             75882449999999998728998999999999999984
Q gi|254780215|r  217 KRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF  254 (262)
Q Consensus       217 ~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f  254 (262)
T Consensus       200 ~R--~f~~~ea~~~~~k---~~gs~~~~~fi~Na~llv  232 (254)
T COG4464         200 KR--PFHMQEAFHLVTK---KDGSELPEKFIENAELLV  232 (254)
T ss_pred             CC--CCCHHHHHHHHHH---HHHHHHHHHHHHCHHHHH
T ss_conf             88--9338999999987---663433899875789874