HHsearch alignment for GI: 254780215 and conserved domain: PRK05985
>PRK05985 cytosine deaminase; Provisional.
Probab=92.76 E-value=0.93 Score=25.75 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCCCEEECHHHH-------HHHHHHHHHHHHCCCCCCCCEECCC---CHHHHHHHHCCCCEEECCCCC
Q ss_conf 899998766420442033000233-------3579998531000367533112146---402344321035202023322
Q gi|254780215|r 111 VFLRHIEASRITGIPLVIHSRSAD-------DDMAAILQEEMKKGPFPFVIHCFSS---SQKLADICLELGGYISFTGMI 180 (262)
Q Consensus 111 vF~~ql~lA~e~~~pv~iH~r~a~-------~~~l~iL~~~~~~~~~~~i~H~FsG---~~~~~~~~l~~g~y~S~~g~i 180 (262)
T Consensus 193 ~l~~~~~lA~~~g~~i~iH~~e~~~~~~~~~~~~~~~~~~~gl~-g~v~~~H~~~l~~l~~~~~~~~~~~~a~~~v~~~~ 271 (398)
T PRK05985 193 QLDIVFGLAERHGVGIDIHLHEPGELGAFQLELIAARTRALGMQ-GRVAVSHAFCLGDLPERELDRLAARLAEAGVAIMT 271 (398)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCEEC
T ss_conf 99999999998599868987577771077999999999982999-99897755541269999999999998529955012
Q ss_pred CHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHH
Q ss_conf 113332---2333321056671798307866787776887588244999999999872899899----999999999998
Q gi|254780215|r 181 TFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED----LMEETTKNALKL 253 (262)
Q Consensus 181 ~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ee----i~~~~~~N~~~~ 253 (262)
T Consensus 272 ~~~~~~~~~pv~~l~~-aG-V~V~LGtDg~~~~~~p~----~~~d~-l~~a~~~~~~~~~~~~~~~~~al~maT~~gAra 344 (398)
T PRK05985 272 NAPGSRPVPPVAALRE-AG-VTVFGGNDGIRDTWWPY----GNGDM-LERAMLIGYRSGFRTDDELEVALDCVTHGGARA 344 (398)
T ss_pred CCCCCCCCCCHHHHHH-CC-CCEEECCCCCCCCCCCC----CCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6876789874999997-69-96896378788877877----88789-999999997528998799999999998999997
Q ss_pred HHH
Q ss_conf 425
Q gi|254780215|r 254 FSK 256 (262)
Q Consensus 254 f~~ 256 (262)
T Consensus 345 LGl 347 (398)
T PRK05985 345 LGL 347 (398)
T ss_pred CCC
T ss_conf 599