HHsearch alignment for GI: 254780215 and conserved domain: PRK05985

>PRK05985 cytosine deaminase; Provisional.
Probab=92.76  E-value=0.93  Score=25.75  Aligned_cols=138  Identities=12%  Similarity=0.024  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHCCCCCEEECHHHH-------HHHHHHHHHHHHCCCCCCCCEECCC---CHHHHHHHHCCCCEEECCCCC
Q ss_conf             899998766420442033000233-------3579998531000367533112146---402344321035202023322
Q gi|254780215|r  111 VFLRHIEASRITGIPLVIHSRSAD-------DDMAAILQEEMKKGPFPFVIHCFSS---SQKLADICLELGGYISFTGMI  180 (262)
Q Consensus       111 vF~~ql~lA~e~~~pv~iH~r~a~-------~~~l~iL~~~~~~~~~~~i~H~FsG---~~~~~~~~l~~g~y~S~~g~i  180 (262)
T Consensus       193 ~l~~~~~lA~~~g~~i~iH~~e~~~~~~~~~~~~~~~~~~~gl~-g~v~~~H~~~l~~l~~~~~~~~~~~~a~~~v~~~~  271 (398)
T PRK05985        193 QLDIVFGLAERHGVGIDIHLHEPGELGAFQLELIAARTRALGMQ-GRVAVSHAFCLGDLPERELDRLAARLAEAGVAIMT  271 (398)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCEEC
T ss_conf             99999999998599868987577771077999999999982999-99897755541269999999999998529955012


Q ss_pred             CHHHHH---HHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHH
Q ss_conf             113332---2333321056671798307866787776887588244999999999872899899----999999999998
Q gi|254780215|r  181 TFPKYD---ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED----LMEETTKNALKL  253 (262)
Q Consensus       181 ~~~~~~---~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~ee----i~~~~~~N~~~~  253 (262)
T Consensus       272 ~~~~~~~~~pv~~l~~-aG-V~V~LGtDg~~~~~~p~----~~~d~-l~~a~~~~~~~~~~~~~~~~~al~maT~~gAra  344 (398)
T PRK05985        272 NAPGSRPVPPVAALRE-AG-VTVFGGNDGIRDTWWPY----GNGDM-LERAMLIGYRSGFRTDDELEVALDCVTHGGARA  344 (398)
T ss_pred             CCCCCCCCCCHHHHHH-CC-CCEEECCCCCCCCCCCC----CCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6876789874999997-69-96896378788877877----88789-999999997528998799999999998999997


Q ss_pred             HHH
Q ss_conf             425
Q gi|254780215|r  254 FSK  256 (262)
Q Consensus       254 f~~  256 (262)
T Consensus       345 LGl  347 (398)
T PRK05985        345 LGL  347 (398)
T ss_pred             CCC
T ss_conf             599