HHsearch alignment for GI: 254780215 and conserved domain: PRK09230
>PRK09230 cytosine deaminase; Provisional.
Probab=97.38 E-value=0.016 Score=37.43 Aligned_cols=220 Identities=7% Similarity=0.053 Sum_probs=100.0
Q ss_pred HHHHHHHCCCCEE---EEE-CCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHCCC-CCCCEEC
Q ss_conf 9999998699899---991-6798778999999985572332---112445443344678899885310013-3321004
Q gi|254780215|r 21 VIMRAHQANVLKM---IAI-AIKVKDFVPLIKLCQDYPSSIF---CSVGTHPCHAHEENEVLVDELVCLASH-PRVVAIG 92 (262)
Q Consensus 21 ~i~~a~~~gv~~~---i~~-~~~~~~~~~~~~l~~~~p~~i~---~a~GiHP~~~~~~~~~~~~~l~~l~~~-~~~~aIG 92 (262)
T Consensus 107 ~l~~~ia~Gtt~iRtHvDv~dp~l~~leal~~~re~~~~~idlQiVAFPQ~Gl~~~~~~~~Ll---~eAl~~Gadv--vG 181 (426)
T PRK09230 107 TLKWQIANGIQHVRTHVDVSDPTLTALKAMLEVKEEVAPWVDLQIVAFPQEGILSYPNGEALL---EEALRLGADV--VG 181 (426)
T ss_pred HHHHHHHHCHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHH---HHHHHHCCCE--EE
T ss_conf 999999818244013345377035169999999998435201688830365424688779999---9999808988--84
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH---HHHHHHHHHHHHHHC--CCCCC-CCEECCC---CHHH
Q ss_conf 4677553322111024678999987664204420330002---333579998531000--36753-3112146---4023
Q gi|254780215|r 93 ETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS---ADDDMAAILQEEMKK--GPFPF-VIHCFSS---SQKL 163 (262)
Q Consensus 93 EiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~---a~~~~l~iL~~~~~~--~~~~~-i~H~FsG---~~~~ 163 (262)
T Consensus 182 --Gvp~~~--~~~~~~~~~L~~vf~LA~~~~~~vDiHldE~~d~~~~~l~~ia~~t~~~g~~grVt~sH~~sL~~~~~~~ 257 (426)
T PRK09230 182 --AIPHFE--FTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAY 257 (426)
T ss_pred --CCCCCC--CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCHHH
T ss_conf --789977--7804579999999999998299858877788883378999999999983899865630005453399999
Q ss_pred HHHHH----CCCCEEECCCCC-CHHHH-----------HHHHHHHHCCCCCCEEEEECC---CCCCCCCCCCCCCCHHHH
Q ss_conf 44321----035202023322-11333-----------223333210566717983078---667877768875882449
Q gi|254780215|r 164 ADICL----ELGGYISFTGMI-TFPKY-----------DALRAIARGIPMDRVLVETDS---PYIVPVSCQGKRNEPAYV 224 (262)
Q Consensus 164 ~~~~l----~~g~y~S~~g~i-~~~~~-----------~~~~e~v~~iPldriLlETDs---P~l~p~~~r~~~n~P~~i 224 (262)
T Consensus 258 ~~~~~~~laeagi~vvslP~tNl~LqgR~~~~p~~Rgvtpv~eL~~a--GV~V~~GsDnvrD~w~---P~--G~~D~Le~ 330 (426)
T PRK09230 258 TSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRGITRVKEMLEA--GINVCFGHDDVFDPWY---PL--GTANMLQV 330 (426)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--CCEEEEECCCCCCCCC---CC--CCCCHHHH
T ss_conf 99999999982985785254332135656778888887789999976--9869980788877874---89--99889999
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998728-99899999999999998425
Q gi|254780215|r 225 VNTAKALAKEKD-VSYEDLMEETTKNALKLFSK 256 (262)
Q Consensus 225 ~~~~~~iA~i~~-~~~eei~~~~~~N~~~~f~~ 256 (262)
T Consensus 331 a~l~~~~~~l~~~~~l~~~~~~vT~~~A~~lgl 363 (426)
T PRK09230 331 LHMGLHVCQLMGYGQINDGLNLITTHSARTLNL 363 (426)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999970488778999999974258886199