HHsearch alignment for GI: 254780215 and conserved domain: PRK11449

>PRK11449 putative deoxyribonuclease YjjV; Provisional.
Probab=100.00  E-value=0  Score=539.03  Aligned_cols=251  Identities=29%  Similarity=0.500  Sum_probs=237.7

Q ss_pred             EEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             16861388875652268999999998699899991679877899999998557233211244544334467889988531
Q gi|254780215|r    2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVC   81 (262)
Q Consensus         2 ~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~   81 (262)
T Consensus         5 ~iDtH~HL~~~~~~~d~~~vi~~a~~~gv~~i~~~g~~~~~~~~~~~l~~~~~~-i~~~vGiHP~~~~~~~~~~~~~l~~   83 (258)
T PRK11449          5 FIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAANFARVLALAERYQP-LYAALGLHPGMLEKHSDVSLDQLQQ   83 (258)
T ss_pred             EEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CEEECCCCCCHHHCCCCCCHHHHHH
T ss_conf             798611799815476999999999982999999934999999999999875963-0187058976111057005999999


Q ss_pred             HCC-C-CCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCEECCC
Q ss_conf             001-3-33210044677553322111024678999987664204420330002333579998531000367533112146
Q gi|254780215|r   82 LAS-H-PRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSS  159 (262)
Q Consensus        82 l~~-~-~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~a~~~~l~iL~~~~~~~~~~~i~H~FsG  159 (262)
T Consensus        84 ~l~~~~~~vvaIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvviH~R~A~~~~~~~l~~~--~~~~~gi~H~FsG  161 (258)
T PRK11449         84 ALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH--DLPRTGVVHGFSG  161 (258)
T ss_pred             HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHC--CCCCCCEEEECCC
T ss_conf             99818787899834564778899869999999999999999849975986221379999999855--8885754762789


Q ss_pred             CHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
Q ss_conf             40234432103520202332211333223333210566717983078667877768875882449999999998728998
Q gi|254780215|r  160 SQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY  239 (262)
Q Consensus       160 ~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~  239 (262)
T Consensus       162 ~~~~a~~~l~~G~yiS~~g~it~~~~~~~~~~v~~iPldrll~ETDsPyl~p~~~rg~~NeP~~i~~v~~~iA~ik~~~~  241 (258)
T PRK11449        162 SLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFDVLCELRPEPA  241 (258)
T ss_pred             CHHHHHHHHHCCCEEEECEEEECCCCHHHHHHHHHCCCHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf             99999999976982876548634677999999995991568993369999899999998861899999999998869799


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999842
Q gi|254780215|r  240 EDLMEETTKNALKLFS  255 (262)
Q Consensus       240 eei~~~~~~N~~~~f~  255 (262)
T Consensus       242 eev~~~~~~N~~~lF~  257 (258)
T PRK11449        242 DEIAEVLLNNTYTLFR  257 (258)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999859