HHsearch alignment for GI: 254780215 and conserved domain: cd00375

>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=94.94  E-value=0.21  Score=30.10  Aligned_cols=105  Identities=18%  Similarity=0.276  Sum_probs=65.1

Q ss_pred             EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             68613888756522689999999986998999916-----------7987--7899999998557233211244544334
Q gi|254780215|r    3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVK--DFVPLIKLCQDYPSSIFCSVGTHPCHAH   69 (262)
Q Consensus         3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~--~~~~~~~l~~~~p~~i~~a~GiHP~~~~   69 (262)
T Consensus       132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG~~~i~~ml~a~d~~P~N~g-~lg---KGn~  200 (567)
T cd00375         132 IDTHVHFICPQ-------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIG-FLG---KGNG  200 (567)
T ss_pred             EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-EEE---CCCC
T ss_conf             16788843888-------899998658767635866787777764468977999999986552772135-631---3666


Q ss_pred             CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf             46788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r   70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR  131 (262)
Q Consensus        70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r  131 (262)
T Consensus       201 s~~~~l~eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAd~~DvQvaiHTD  249 (567)
T cd00375         201 SSPDALAEQIE----------AGACGLKLH---EDWGATPAAIDTCLSVADEYDVQVAIHTD  249 (567)
T ss_pred             CCHHHHHHHHH----------HHHCCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             88578999998----------653401112---22478777888876666650860454305