HHsearch alignment for GI: 254780215 and conserved domain: cd00375
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=94.94 E-value=0.21 Score=30.10 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=65.1
Q ss_pred EEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEEC-----------CCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 68613888756522689999999986998999916-----------7987--7899999998557233211244544334
Q gi|254780215|r 3 IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIA-----------IKVK--DFVPLIKLCQDYPSSIFCSVGTHPCHAH 69 (262)
Q Consensus 3 iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~-----------~~~~--~~~~~~~l~~~~p~~i~~a~GiHP~~~~ 69 (262)
T Consensus 132 iDtHvHfi~Pq-------q~~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG~~~i~~ml~a~d~~P~N~g-~lg---KGn~ 200 (567)
T cd00375 132 IDTHVHFICPQ-------QIEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIG-FLG---KGNG 200 (567)
T ss_pred EEEEEEECCHH-------HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-EEE---CCCC
T ss_conf 16788843888-------899998658767635866787777764468977999999986552772135-631---3666
Q ss_pred CCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
Q ss_conf 46788998853100133321004467755332211102467899998766420442033000
Q gi|254780215|r 70 EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSR 131 (262)
Q Consensus 70 ~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r 131 (262)
T Consensus 201 s~~~~l~eqi~----------AGa~GlKiH---EDWGaTpa~Id~~L~vAd~~DvQvaiHTD 249 (567)
T cd00375 201 SSPDALAEQIE----------AGACGLKLH---EDWGATPAAIDTCLSVADEYDVQVAIHTD 249 (567)
T ss_pred CCHHHHHHHHH----------HHHCCCCCC---CCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 88578999998----------653401112---22478777888876666650860454305