HHsearch alignment for GI: 254780215 and conserved domain: cd01314
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.88 E-value=0.0031 Score=42.26 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=57.0
Q ss_pred EEEEECCCCCHH----HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 168613888756----52268999999998699899991679------87789999999855723321124454433446
Q gi|254780215|r 2 LIDTHCHLLLPD----FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE 71 (262)
Q Consensus 2 ~iD~H~HL~~~~----~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~ 71 (262)
T Consensus 53 fID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~-~~ 128 (447)
T cd01314 53 GIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKAD---GKSVIDYGFHMIIT-DW 128 (447)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEEEEEEE-CC
T ss_conf 898772578887886450228899999996891699516889999878999999999853---78635554689995-48
Q ss_pred CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf 7889988531001333210044677553322111024678999987664204420330002
Q gi|254780215|r 72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS 132 (262)
Q Consensus 72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~ 132 (262)
T Consensus 129 ~~~~~~~~~~l~~~-G~~~~-k~~~~~~~-~-~~-~~~~~l~~~~~~a~~~~~~~~~h~e~ 184 (447)
T cd01314 129 TDSVIEELPELVKK-GISSF-KVFMAYKG-L-LM-VDDEELLDVLKRAKELGALVMVHAEN 184 (447)
T ss_pred CHHHHHHHHHHHHC-CCCEE-EEEECCCC-C-CC-CCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 87799999999983-87867-78740379-6-23-58799999999998639979992588