HHsearch alignment for GI: 254780215 and conserved domain: cd01314

>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=97.88  E-value=0.0031  Score=42.26  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=57.0

Q ss_pred             EEEEECCCCCHH----HHCCHHHHHHHHHHCCCCEEEEECCC------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             168613888756----52268999999998699899991679------87789999999855723321124454433446
Q gi|254780215|r    2 LIDTHCHLLLPD----FDEDRHDVIMRAHQANVLKMIAIAIK------VKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEE   71 (262)
Q Consensus         2 ~iD~H~HL~~~~----~~~d~~~~i~~a~~~gv~~~i~~~~~------~~~~~~~~~l~~~~p~~i~~a~GiHP~~~~~~   71 (262)
T Consensus        53 fID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~-~~  128 (447)
T cd01314          53 GIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKAD---GKSVIDYGFHMIIT-DW  128 (447)
T ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHC---CCCEEEEEEEEEEE-CC
T ss_conf             898772578887886450228899999996891699516889999878999999999853---78635554689995-48


Q ss_pred             CHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECHH
Q ss_conf             7889988531001333210044677553322111024678999987664204420330002
Q gi|254780215|r   72 NEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS  132 (262)
Q Consensus        72 ~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~~pv~iH~r~  132 (262)
T Consensus       129 ~~~~~~~~~~l~~~-G~~~~-k~~~~~~~-~-~~-~~~~~l~~~~~~a~~~~~~~~~h~e~  184 (447)
T cd01314         129 TDSVIEELPELVKK-GISSF-KVFMAYKG-L-LM-VDDEELLDVLKRAKELGALVMVHAEN  184 (447)
T ss_pred             CHHHHHHHHHHHHC-CCCEE-EEEECCCC-C-CC-CCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             87799999999983-87867-78740379-6-23-58799999999998639979992588