HHsearch results for GI: 254780215 and protein with PDBid: 3cjp_A
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824}
Probab=99.78 E-value=3.2e-17 Score=133.91 Aligned_cols=218 Identities=17% Similarity=0.137 Sum_probs=140.3
Q ss_pred CEEEEECCCCCHHHHCCHHHHHHHHHHCCCCEEEEECCCH----------------------------------HHHHHH
Q ss_conf 9168613888756522689999999986998999916798----------------------------------778999
Q gi|254780215|r 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKV----------------------------------KDFVPL 46 (262)
Q Consensus 1 M~iD~H~HL~~~~~~~d~~~~i~~a~~~gv~~~i~~~~~~----------------------------------~~~~~~ 46 (262)
|+||+|||+.. ..+..++.+.+.||.+.+...+.. ......
T Consensus 3 mIID~H~Hl~~-----~~~~~~~~~~~~gi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l 77 (272)
T 3cjp_A 3 LIIDGHTHVIL-----PVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGKTNSMIDVRRNSIKEL 77 (272)
T ss_dssp CCEEEEEECCS-----SHHHHHHHHHHHTCCEEEEECCSCCGGGCCSHHHHHHHHHHHHHHHTTSSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 08988727978-----8799999999859987998479997120788999998555323699834401355558999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 99998557233211244544334467889988531001333210044677553322111024678999987664204-42
Q gi|254780215|r 47 IKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG-IP 125 (262)
Q Consensus 47 ~~l~~~~p~~i~~a~GiHP~~~~~~~~~~~~~l~~l~~~~~~~aIGEiGLD~~~~~~~~e~Q~~vF~~ql~lA~e~~-~p 125 (262)
.++++++|+.+.+..+++|+... ....+++........+.++++..-. ... ...++..++.+.+++ +|
T Consensus 78 ~~~~~~~p~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~----~~~----~~~~~~~~~~~~e~~~lp 146 (272)
T 3cjp_A 78 TNVIQAYPSRYVGFGNVPVGLSE---NDTNSYIEENIVNNKLVGIGELTPA----SGQ----IKSLKPIFKYSMDSGSLP 146 (272)
T ss_dssp HHHHHHSTTTEEEEECCCTTCCH---HHHHHHHHHHTTTTTCSEEEEECCC----TTC----GGGGHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCEEEEEEECCCCCCH---HHHHHHHHHHHHHCCCCCCCCCCCC----CCC----CHHHHHHHHHHHHCCCCE
T ss_conf 99999789928999974689986---8999999999864574333345776----557----565789999999809965
Q ss_pred CEEECHHH-----HHHHHHHHHHHHHCCCCCCCC-EECCCCHHHHHHHHCC--CCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 03300023-----335799985310003675331-1214640234432103--520202332211333223333210566
Q gi|254780215|r 126 LVIHSRSA-----DDDMAAILQEEMKKGPFPFVI-HCFSSSQKLADICLEL--GGYISFTGMITFPKYDALRAIARGIPM 197 (262)
Q Consensus 126 v~iH~r~a-----~~~~l~iL~~~~~~~~~~~i~-H~FsG~~~~~~~~l~~--g~y~S~~g~i~~~~~~~~~e~v~~iPl 197 (262)
+++|+... ..++.++++++ +..++++ |+..+....+-+.++. +.|+.+++..+ ..++++++..+.
T Consensus 147 v~~H~~~~~~~~~~~~~~~~~~~~---P~l~iv~~H~G~~~~~~~~~~l~~~~n~y~d~s~~~~----~~~~~~~~~~g~ 219 (272)
T 3cjp_A 147 IWIHAFNPLVLQDIKEIAELCKAF---PKVPVILGHMGGSNWMTAVELAKEIQNLYLDTSAYFS----TFVLKIVINELP 219 (272)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHS---TTSCEEEGGGGGGGHHHHHHHHHHCTTEEEECTTCSC----HHHHHHHHHHST
T ss_pred EEEECCCCCCCCCHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCH----HHHHHHHHHHCC
T ss_conf 997034455656899999999868---8884799807886499999999858965885233436----999999999798
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7179830786678777688758824499999999987289989999999999999842
Q gi|254780215|r 198 DRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255 (262)
Q Consensus 198 driLlETDsP~l~p~~~r~~~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~ 255 (262)
||||.+||.||..+. ..++.+.+ .+++.++..++.++|+.||||
T Consensus 220 dRilfGSD~P~~~~~-------------~~~~~i~~-~~l~~e~~~~I~~~NA~rl~~ 263 (272)
T 3cjp_A 220 LKCIFGTDMPFGDLQ-------------LSIEAIKK-MSNDSYVANAVLGDNISRLLN 263 (272)
T ss_dssp TTEECCCCTTSSCHH-------------HHHHHHHH-HCSSHHHHHHHHTHHHHHHHT
T ss_pred CEEEEECCCCCCCHH-------------HHHHHHHH-CCCCHHHHHHHHHHHHHHHHC
T ss_conf 919996999999989-------------99999996-698999999998689999868