HHsearch results for GI: 254780215 and protein with PDBid: 3e2v_A

>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.50A {Saccharomyces cerevisiae YJM789}
Probab=100.00  E-value=0  Score=496.94  Aligned_cols=255  Identities=27%  Similarity=0.382  Sum_probs=227.5

Q ss_pred             EEEEECCCCCHHH----------HCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC----CCCCCCCCCCCC
Q ss_conf             1686138887565----------22689999999986998999916798778999999985572----332112445443
Q gi|254780215|r    2 LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS----SIFCSVGTHPCH   67 (262)
Q Consensus         2 ~iD~H~HL~~~~~----------~~d~~~~i~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~p~----~i~~a~GiHP~~   67 (262)
                      +||+||||.+..|          +.|++++|+||+++||.+++++|+++++|.++++|+++|++    +||+++|||||+
T Consensus        14 ~iD~~~~L~d~~F~~~y~~~~~hd~Dl~~Vl~rA~~~GV~~ii~~g~~~~~~~~a~~La~~~~~~~p~~i~~avGiHP~~   93 (401)
T 3e2v_A           14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDLSPLKLYHTIGVHPCC   93 (401)
T ss_dssp             EEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHHHHHHHHHHHHHHTTTCSSEEEEEECCCGGG
T ss_pred             EEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH
T ss_conf             38973478995766844676677137999999999879998999159999999999999966235776089998518141


Q ss_pred             CCCCCHHH------------------------------------HHHHHHH------CCCCCCCEECCCCCCCCC-CCCC
Q ss_conf             34467889------------------------------------9885310------013332100446775533-2211
Q gi|254780215|r   68 AHEENEVL------------------------------------VDELVCL------ASHPRVVAIGETGLDRYH-NAHT  104 (262)
Q Consensus        68 ~~~~~~~~------------------------------------~~~l~~l------~~~~~~~aIGEiGLD~~~-~~~~  104 (262)
                      +.+..+..                                    ++.+..+      ...++++|||||||||++ +..+
T Consensus        94 a~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~l~~l~~~~~~~~~~~~~~vvAIGEiGLDy~~~~~~~  173 (401)
T 3e2v_A           94 VNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSS  173 (401)
T ss_dssp             GGGGC------------------CHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHCSTTCSEEEEEEEEEETTCTTTSC
T ss_pred             HCCCCCHHHCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCC
T ss_conf             00156101000011101233322100133432201452013678999999999987733898799998036889778998


Q ss_pred             CHHHHHHHHHHHHHH----HHCCCCCEEECHHHHHHHHHHHHHHHHC-------------------------CCCCCCCE
Q ss_conf             102467899998766----4204420330002333579998531000-------------------------36753311
Q gi|254780215|r  105 IEEQKVVFLRHIEAS----RITGIPLVIHSRSADDDMAAILQEEMKK-------------------------GPFPFVIH  155 (262)
Q Consensus       105 ~e~Q~~vF~~ql~lA----~e~~~pv~iH~r~a~~~~l~iL~~~~~~-------------------------~~~~~i~H  155 (262)
                      ++.|+++|++||+||    +++++||+||||+|+++++++|+++...                         .+.++|+|
T Consensus       174 ~e~Q~~~F~~QL~lA~~~~k~~~lPv~iH~R~A~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~H  253 (401)
T 3e2v_A          174 KEMQKVFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVH  253 (401)
T ss_dssp             HHHHHHHHHHHHHHTTSSHHHHTSCEEEEEESCHHHHHHHHHHHHHCEECSSCTTCGGGC--CCTTCEECCCTTCCEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99999999999999998515308853999644269999999986014443221000000121112221123677656998


Q ss_pred             ECCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC------------------
Q ss_conf             21464023443210352020233221133322333321056671798307866787776887------------------
Q gi|254780215|r  156 CFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGK------------------  217 (262)
Q Consensus       156 ~FsG~~~~~~~~l~~g~y~S~~g~i~~~~~~~~~e~v~~iPldriLlETDsP~l~p~~~r~~------------------  217 (262)
                      ||||+.+++++++++|+|||||+.+++.++.+++++++.+|+||||+|||||||+|.|.++.                  
T Consensus       254 ~FsG~~~~a~~~l~lg~~~~~s~~~~~~~~~~~~~~vk~iPldrlLlETDaPyl~p~p~~~~~~~~~~~~~~~~~~~~~~  333 (401)
T 3e2v_A          254 SFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAF  333 (401)
T ss_dssp             SCCCCHHHHHHHHHHCTTEEEEECGGGGSSHHHHHHHHTSCGGGEEECCCTTSCCCCTTSTTHHHHHHHHHHSCCCSSSS
T ss_pred             ECCCCHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             05796788777750587499987665434567999998699467798257887677676676433233333222344442


Q ss_pred             ----------------------CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             ----------------------588244999999999872899899999999999998425
Q gi|254780215|r  218 ----------------------RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK  256 (262)
Q Consensus       218 ----------------------~n~P~~i~~~~~~iA~i~~~~~eei~~~~~~N~~~~f~~  256 (262)
                                            +|+|++|+.|++.||++|+++++++++++++|+++|||.
T Consensus       334 ~~~k~~k~~~~~~~~~~~~~k~RNEP~~i~~v~~~iA~lk~~~~eeva~~~~~N~~~lFgl  394 (401)
T 3e2v_A          334 KSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVVSEVKDVDLATLIDTTWKTTCKIFGE  394 (401)
T ss_dssp             EEECGGGSGGGTTSSSCEEETTCCCGGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf             2112111233333221134677887657999999999762999999999999999999579