RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780215|ref|YP_003064628.1| hypothetical protein
CLIBASIA_00500 [Candidatus Liberibacter asiaticus str. psy62]
         (262 letters)



>gnl|CDD|30053 cd01310, TatD_DNAse, TatD like proteins;  E.coli TatD is a
           cytoplasmic protein, shown to have magnesium dependent
           DNase activity..
          Length = 251

 Score =  267 bits (685), Expect = 2e-72
 Identities = 114/254 (44%), Positives = 164/254 (64%), Gaps = 3/254 (1%)

Query: 2   LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
           LIDTHCHL  P FD DR DV+ RA +A V+K+I +   +K     ++L + Y + ++ +V
Sbjct: 1   LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTDLKSSKRALELAKKYDN-VYAAV 59

Query: 62  GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
           G HP  A E  +  +D L  LA++P+VVAIGE GLD Y +    E QK VF   +E ++ 
Sbjct: 60  GLHPHDADEHVDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKE 119

Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181
             +P+VIHSR A +D+  IL+E     P   V HCFS S + A   L+LG YIS +G++T
Sbjct: 120 LNLPVVIHSRDAHEDVLEILKEYGP--PKRGVFHCFSGSAEEAKELLDLGFYISISGIVT 177

Query: 182 FPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED 241
           F   + LR + + IP++R+L+ETDSPY+ PV  +GKRNEPAYV + A+ +A+ K +S E+
Sbjct: 178 FKNANELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKGISVEE 237

Query: 242 LMEETTKNALKLFS 255
           + E TT+NA +LF 
Sbjct: 238 VAEVTTENAKRLFG 251


>gnl|CDD|30433 COG0084, TatD, Mg-dependent DNase [DNA replication, recombination,
           and repair].
          Length = 256

 Score =  264 bits (677), Expect = 1e-71
 Identities = 117/258 (45%), Positives = 169/258 (65%), Gaps = 5/258 (1%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
           MLIDTHCHL   +FDEDR +VI RA +A V KM+ +   ++DF   ++L + YP+ ++ +
Sbjct: 2   MLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPN-VYAA 60

Query: 61  VGTHPCHAHEENEVLVDELV-CLASHPRVVAIGETGLDRYHNAH-TIEEQKVVFLRHIEA 118
           VG HP  A E +E  ++EL      HP+VVAIGE GLD Y +     E Q+ VF   +E 
Sbjct: 61  VGVHPLDADEHSEEDLEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLEL 120

Query: 119 SRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG 178
           ++   +P++IH+R A +D   IL+EE    P   V+HCFS S + A   L+LG YIS +G
Sbjct: 121 AKELNLPVIIHTRDAHEDTLEILKEE--GAPVGGVLHCFSGSAEEARKLLDLGFYISISG 178

Query: 179 MITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS 238
           ++TF   + LR +AR +P+DR+L+ETD+PY+ PV  +GKRNEPAYV + A+ LA+ K +S
Sbjct: 179 IVTFKNAEKLREVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAELKGIS 238

Query: 239 YEDLMEETTKNALKLFSK 256
            E++ E TT+NA +LF  
Sbjct: 239 AEEVAEITTENAKRLFGL 256


>gnl|CDD|144567 pfam01026, TatD_DNase, TatD related DNase.  This family of proteins
           are related to a large superfamily of metalloenzymes.
           TatD, a member of this family has been shown
           experimentally to be a DNase enzyme.
          Length = 255

 Score =  258 bits (662), Expect = 9e-70
 Identities = 112/256 (43%), Positives = 165/256 (64%), Gaps = 4/256 (1%)

Query: 3   IDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVG 62
           ID HCHL    FD DR +VI RA +A V  ++ +   +KDF   ++L + YP  ++ +VG
Sbjct: 1   IDAHCHLDFKKFDGDRDEVIERAREAGVTAVVVVGTDLKDFERALELARKYPGKVYAAVG 60

Query: 63  THPCHAHEENEVLVDELV--CLASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEAS 119
            HP  A E +E +++ L    LA HP+VVAIGE GLD Y+ +    E Q+ VF R +E +
Sbjct: 61  VHPHEADEASEEVLEALEKLKLAEHPKVVAIGEIGLDYYYVDESPKEAQEEVFRRQLELA 120

Query: 120 RITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179
           +   +P+VIH+R A++D+  IL+E    G    V+HCF+ S + A   L+LG YIS +G+
Sbjct: 121 KELDLPVVIHTRDAEEDLLEILKEAGAPGL-RVVLHCFTGSLETAKEILDLGFYISISGI 179

Query: 180 ITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSY 239
           +TF   + LR +   IP+DR+LVETD+PY+ PV  +GKRNEPAYV + A+ LA+ K +S 
Sbjct: 180 VTFKNAEELREVVAEIPLDRLLVETDAPYLAPVPYRGKRNEPAYVPHVAEKLAELKGISE 239

Query: 240 EDLMEETTKNALKLFS 255
           E++ + TT+NA +LF 
Sbjct: 240 EEVAKITTENAKRLFG 255


>gnl|CDD|38230 KOG3020, KOG3020, KOG3020, TatD-related DNase [Replication,
           recombination and repair].
          Length = 296

 Score =  171 bits (435), Expect = 2e-43
 Identities = 96/282 (34%), Positives = 143/282 (50%), Gaps = 30/282 (10%)

Query: 1   MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
           ML D +CH+     D D   V+ RA QA V K+I     +KD    ++L + YP S++ +
Sbjct: 17  MLEDIYCHIQAHPSDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYPT 76

Query: 61  VGTHPCHAHE-----ENEVLVDELVCLAS---HPRVVAIGETGLDRYHNAHTI--EEQKV 110
            G HP  + E       E  +D L+ +      P+VVAIGE GLD Y        EEQK 
Sbjct: 77  FGVHPHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLD-YDRLQFSDKEEQKT 135

Query: 111 VFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL 170
           VF + ++ ++   +PL IH RSA +D+  IL+  + +     V+H F+ S + A   L+L
Sbjct: 136 VFEKQLDLAKRLKLPLFIHCRSAHEDLLEILKRFLPECHKKVVVHSFTGSAEEAQKLLKL 195

Query: 171 GGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVP-----------------VS 213
           G YI FTG     K +    + R IP++R+L+ETDSPY  P                   
Sbjct: 196 GLYIGFTGCSL--KTEENLEVLRSIPLERLLLETDSPYCGPKPSSHAGPKYVKTLFSESY 253

Query: 214 CQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255
               RNEP  V+  A+ +A+ KD+  E++ E T +N ++LF 
Sbjct: 254 PLKGRNEPCNVLQVAEVVAEAKDLDLEEVAEATYENTIRLFK 295


>gnl|CDD|31296 COG1099, COG1099, Predicted metal-dependent hydrolases with the
           TIM-barrel fold [General function prediction only].
          Length = 254

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 64/272 (23%), Positives = 114/272 (41%), Gaps = 39/272 (14%)

Query: 1   MLIDTHCHLLLPDFDEDR-------HDVIMRAH----QANVLKMIAIAIKVKDFVPLIKL 49
           M ID+H HL +  F++          +VI  AH           +    ++    P  + 
Sbjct: 1   MYIDSHIHLDVRGFEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEP--ER 58

Query: 50  CQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQK 109
            +     +  +VG HP     E E +++EL  L S+  VVAIGE GL+        +E+K
Sbjct: 59  AEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEE-----ATDEEK 113

Query: 110 VVFLRHIEASRITGIPLVIHSRSADDDMAA-----ILQEEMKKGPFPFVIHCFSSSQKLA 164
            VF   +E +R   +P+++H+   +   A      IL E   K     + H    +++  
Sbjct: 114 EVFREQLELARELDVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVIDHV---NEETV 170

Query: 165 DICLELGGYISFTGMITFPKYDALRA--IARGIPMDRVLVETDSPYIVPVSCQGKRNEPA 222
           D  L+   Y+  T  +   K     A  I R    +R+++ +D+            ++P 
Sbjct: 171 DEVLDEEFYVGLT--VQPGKLTVEEAVEIVREYGAERIILNSDAGSAA--------SDPL 220

Query: 223 YVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
            V  TA  + +E+ V  E++ +   +NAL  +
Sbjct: 221 AVPRTALEM-EERGVGEEEIEKVVRENALSFY 251


>gnl|CDD|30035 cd01292, metallo-dependent_hydrolases, Superfamily of
           metallo-dependent hydrolases (also called amidohydrolase
           superfamily) is a large group of proteins that show
           conservation in their 3-dimensional fold (TIM barrel)
           and in details of their active site. The vast majority
           of the members have a conserved metal binding site,
           involving four histidines and one aspartic acid residue.
           In the common reaction mechanism, the metal ion (or
           ions) deprotonate a water molecule for a nucleophilic
           attack on the substrate. The family includes urease
           alpha, adenosine deaminase, phosphotriesterase
           dihydroorotases, allantoinases, hydantoinases, AMP-,
           adenine and cytosine deaminases, imidazolonepropionase,
           aryldialkylphosphatase, chlorohydrolases,
           formylmethanofuran dehydrogenases and others..
          Length = 275

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 39/240 (16%), Positives = 65/240 (27%), Gaps = 34/240 (14%)

Query: 2   LIDTHCHLLLPDFD--------------------EDRHDVIMRAHQANVLKMIAIA---- 37
            IDTH HL                          ED    +       V  ++ +     
Sbjct: 1   FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPP 60

Query: 38  --IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETG 95
                     + +  +             P      +E     L  L    R + +G  G
Sbjct: 61  PTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALL--LELLRRGLELGAVG 118

Query: 96  LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVI- 154
           L                 R +E +R  G+P+VIH+    D   A+            V+ 
Sbjct: 119 LKLAGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRLGGRVVI 178

Query: 155 -HCFSSSQKLADICLELGGYISFTG---MITFPKYDALRAIARGI-PMDRVLVETDSPYI 209
            H      +L ++  E G  +        +     +   A+ R +    RV + TD P  
Sbjct: 179 GHVSHLDPELLELLKEAGVSLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTLGTDGPPH 238


>gnl|CDD|73064 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
           C19 contains ubiquitinyl hydrolases. They are
           intracellular peptidases that remove ubiquitin molecules
           from polyubiquinated peptides by cleavage of isopeptide
           bonds. They hydrolyze bonds involving the carboxyl group
           of the C-terminal Gly residue of ubiquitin. The purpose
           of the de-ubiquitination is thought to be editing of the
           ubiquitin conjugates, which could rescue them from
           degradation, as well as recycling of the ubiquitin. The
           ubiquitin/proteasome system is responsible for most
           protein turnover in the mammalian cell, and with over 50
           members, family C19 is one of the largest families of
           peptidases in the human genome..
          Length = 311

 Score = 32.2 bits (73), Expect = 0.14
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 134 DDDMAAILQEEMKKGPFPFV--IHCFSSSQKLADICLELGGYISF---TGMITFPKYDAL 188
            D+     + E+   P P    +  + + + + D C       +    TG  TFP Y  +
Sbjct: 162 KDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYLVI 221

Query: 189 RAIARGIPMDRVLVETDSPYIVP 211
                 +  + V  + D P  VP
Sbjct: 222 NMKRFQLLENWVPKKLDVPIDVP 244


>gnl|CDD|31921 COG1735, Php, Predicted metal-dependent hydrolase with the
           TIM-barrel fold [General function prediction only].
          Length = 316

 Score = 30.2 bits (68), Expect = 0.60
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 21/173 (12%)

Query: 101 NAHTIEEQKVVFLRHIEASRITGIPLVIHSRSAD--DDMAAILQEEMKKGPFPFVIHCFS 158
            A T  E+K        A + TG P+  H+ +     +   IL EE        + H   
Sbjct: 144 PAITPLEEKS-LRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEGVDLRKVSIGHMDP 202

Query: 159 SSQKLA--DICLELGGYISF--TGMITFPKYDA-----LRAIARG------IPMDRVLVE 203
           ++  +       + G ++ F   G   +   +      L  +ARG      +  D + + 
Sbjct: 203 NTDDVYYQKKLADRGAFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLS 262

Query: 204 TDSP-YIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255
            D     +  +  G      Y++N      K   V  E +      N  +LF+
Sbjct: 263 DDVFLKSMLKANGG--WGYGYILNDFIPRLKRHGVDEETIDTMLVDNPARLFT 313


>gnl|CDD|30050 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
           subgroup B is part of the superfamily of
           metallo-dependent hydrolases, a large group of proteins
           that show conservation in their 3-dimensional fold (TIM
           barrel) and in details of their active site. The vast
           majority of the members have a conserved metal binding
           site, involving four histidines and one aspartic acid
           residue. In the common reaction mechanism, the metal ion
           (or ions) deprotonate a water molecule for a
           nucleophilic attack on the substrate. The function of
           this subgroup is unknown..
          Length = 338

 Score = 29.4 bits (66), Expect = 0.95
 Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 53/259 (20%)

Query: 13  DFDEDRHDVIMRAHQANVLKMIAIA---IKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAH 69
           + D  R+ VI R+    V   + I+   +  +D +P          ++  +   +P    
Sbjct: 76  NIDGFRYTVIERS-ATRVYAFLNISRVGLVAQDELPDPDNID--EDAVVAAAREYP---- 128

Query: 70  EENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIH 129
                  D +V L +      +GE G+     A              + ++   +PL++H
Sbjct: 129 -------DVIVGLKARASKSVVGEWGIKPLELA-------------KKIAKEADLPLMVH 168

Query: 130 SRSADDDMAAILQEEMKKGPFPFVIHCFS---------SSQKLADICLELGGYISFT--- 177
             S    +  ++   +++G    + HCF+           + L  +       + F    
Sbjct: 169 IGSPPPILDEVV-PLLRRG--DVLTHCFNGKPNGIVDEEGEVLPLVRRARERGVIFDVGH 225

Query: 178 GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDV 237
           G  +F    A  AIA G+  D   + +D      +  + + N P Y + T  +      +
Sbjct: 226 GTASFSFRVARAAIAAGLLPD--TISSD------IHGRNRTNGPVYALATTLSKLLALGM 277

Query: 238 SYEDLMEETTKNALKLFSK 256
             E+++E  T N  ++   
Sbjct: 278 PLEEVIEAVTANPARMLGL 296


>gnl|CDD|31577 COG1387, HIS2, Histidinol phosphatase and related hydrolases of the
           PHP family [Amino acid transport and metabolism /
           General function prediction only].
          Length = 237

 Score = 28.8 bits (64), Expect = 1.6
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 73  EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRS 132
           E   + L+   S+  V  +   G             K      IE +   G  L I+SR 
Sbjct: 111 EDYTERLIAAMSNGAVDILAHPGGRLLGRID-RGAYKEDIEELIELAEKNGKALEINSRP 169

Query: 133 ADDDMAAILQEEMKKGPFPFVI 154
              D  + +    ++      I
Sbjct: 170 GRLDPNSEILRLARELGVKLAI 191


>gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase
           twinkle [Replication, recombination and repair].
          Length = 514

 Score = 28.5 bits (63), Expect = 1.9
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 64  HPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITG 123
           H  +  +   V++D L  +         G   LDR+H    I    + + R         
Sbjct: 368 HAIYVEDIQHVIIDNLQFMMGQ------GMMALDRFHLQDRI----IGYFRQFATQNNIH 417

Query: 124 IPLVIHSRSADDD 136
           + LV+H R  D D
Sbjct: 418 VTLVVHPRKEDGD 430


>gnl|CDD|39084 KOG3881, KOG3881, KOG3881, Uncharacterized conserved protein
           [Function unknown].
          Length = 412

 Score = 28.4 bits (63), Expect = 2.2
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 79  LVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMA 138
           + C  +HP V+A    GLDRY   H I+ +K++   +++ SR+T I L       D  + 
Sbjct: 296 IHCHPTHP-VLASC--GLDRYVRIHDIKTRKLLHKVYVK-SRLTFILLRDDVNIEDPLVP 351

Query: 139 AILQEEMKKGPFP 151
           +   E+  K   P
Sbjct: 352 SEKAEKAMKEKVP 364


>gnl|CDD|146083 pfam03272, Enhancin, Viral enhancin protein. 
          Length = 775

 Score = 28.1 bits (63), Expect = 2.6
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 9/48 (18%)

Query: 42  DFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVV 89
           D VP  +L Q   +  +          +E N         LA   ++V
Sbjct: 369 DLVPYFRLVQVDITLFYVLEDNKVVGLYERN---------LALFKKIV 407


>gnl|CDD|144027 pfam00287, Na_K-ATPase, Sodium / potassium ATPase beta chain. 
          Length = 289

 Score = 28.1 bits (63), Expect = 2.7
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)

Query: 195 IPMDRVL------VETDSPYIVPVSCQGKRNEPA 222
           I M+R++       +  +    P+ C GKR E  
Sbjct: 180 IKMNRIIGFKPEPPKNYNSTAPPIHCTGKRAEDK 213


>gnl|CDD|145658 pfam02622, DUF179, Uncharacterized ACR, COG1678. 
          Length = 159

 Score = 27.5 bits (62), Expect = 3.8
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)

Query: 152 FVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLV 202
           FV+H  S         LE+   +  T        D L AIARG   + +LV
Sbjct: 68  FVLH--SPPDDGEPSSLEVSDGLYLTT-----SLDILEAIARGEGPEDILV 111


>gnl|CDD|29971 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
           known as methionyl aminopeptidase and Peptidase M.
           Catalyzes release of N-terminal amino acids,
           preferentially methionine, from peptides and
           arylamides..
          Length = 238

 Score = 27.4 bits (61), Expect = 4.2
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 165 DICLELGGYISFTGMITFPKYDAL---RAIARGIPMDRVLVETD 205
           +   E G Y +  G   FPK         +  GIP DRVL + D
Sbjct: 37  EFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD 80


>gnl|CDD|32512 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
           transduction mechanisms].
          Length = 249

 Score = 27.3 bits (60), Expect = 4.3
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 9/71 (12%)

Query: 94  TGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA-----ILQEEMKKG 148
             L    N +            I   +   I    +      + AA     +LQ      
Sbjct: 80  INLRDESNTNVELYTD----HLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLADAE 135

Query: 149 PFPFVIHCFSS 159
             P +IHC + 
Sbjct: 136 NGPVLIHCTAG 146


>gnl|CDD|73254 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
           to form hypoxanthine. This reaction is part of one of
           the adenine salvage pathways, as well as the degradation
           pathway. It is important for adenine utilization as a
           purine, as well as a nitrogen source in bacteria and
           archea..
          Length = 422

 Score = 27.1 bits (60), Expect = 4.9
 Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 25/109 (22%)

Query: 2   LIDTHCH---LLLPDFDEDRH-------DVIMRAHQ-ANVLKMIAIAIKVKDFVPLIKLC 50
            ID H H    +L   +  +         VI   H+ ANV  +  I   ++D        
Sbjct: 11  FIDAHLHIESSMLTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKT---- 66

Query: 51  QDYPSSIF-----CSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGET 94
              P  IF     C   T    +    E+  +++  L  HP VV +GE 
Sbjct: 67  ---PLDIFWMLPSCVPATPFETS--GAELTAEDIKELLEHPEVVGLGEV 110


>gnl|CDD|38822 KOG3616, KOG3616, KOG3616, Selective LIM binding factor
            [Transcription].
          Length = 1636

 Score = 27.0 bits (59), Expect = 5.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 226  NTAKALAKEKDVSYEDLMEETTKNALKLFSKISECV 261
              AK +AKE D   ED +++  K  LK   K+ E +
Sbjct: 1256 AKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELI 1291


>gnl|CDD|30584 COG0235, AraD, Ribulose-5-phosphate 4-epimerase and related
           epimerases and aldolases [Carbohydrate transport and
           metabolism].
          Length = 219

 Score = 26.8 bits (59), Expect = 5.5
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 16  EDRHDV--IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDY-PSSIFCSVGTHPC------ 66
             R D   ++  H        A++   +   PL      Y    I C             
Sbjct: 87  RARPDAGAVVHTHSPYA---TALSTLGEPLPPLGTEHLKYFGGGIPC-APYAGPGSVELA 142

Query: 67  HAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEE 107
            A  E   L + ++ L  +  VVA G+T  +  H A  +EE
Sbjct: 143 EALAEAADLAEAVLKLLRNHGVVAWGKTLAEAVHLAEVLEE 183


>gnl|CDD|173865 cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding
           component of an uncharacterized ABC-type
           nickel/dipeptide/oligopeptide-like import system
           contains the type 2 periplasmic binding fold.  This CD
           represents the substrate-binding domain of an
           uncharacterized ATP-binding cassette (ABC) type
           nickel/dipeptide/oligopeptide-like transporter. The
           oligopeptide-binding protein OppA and the
           dipeptide-binding protein DppA show significant sequence
           similarity to NikA, the initial nickel receptor. The
           DppA binds dipeptides and some tripeptides and is
           involved in chemotaxis toward dipeptides, whereas the
           OppA binds peptides of a wide range of lengths (2-35
           amino acid residues) and plays a role in recycling of
           cell wall peptides, which precludes any involvement in
           chemotaxis. Most of other periplasmic binding proteins
           are comprised of only two globular subdomains
           corresponding to domains I and III of the
           dipeptide/oligopeptide binding proteins. The structural
           topology of these domains is most similar to that of the
           type 2 periplasmic binding proteins (PBP2), which are
           responsible for the uptake of a variety of substrates
           such as phosphate, sulfate, polysaccharides,
           lysine/arginine/ornithine, and histidine.  The PBP2 bind
           their ligand in the cleft between these domains in a
           manner resembling a Venus flytrap. After binding their
           specific ligand with high affinity, they can interact
           with a cognate membrane transport complex comprised of
           two integral membrane domains and two cytoplasmically
           located ATPase domains. This interaction triggers the
           ligand translocation across the cytoplasmic membrane
           energized by ATP hydrolysis.  Besides transport
           proteins, the PBP2 superfamily includes the
           ligand-binding domains from ionotropic glutamate
           receptors, LysR-type transcriptional regulators,  and
           unorthodox sensor proteins involved in signal
           transduction.
          Length = 499

 Score = 26.8 bits (60), Expect = 5.7
 Identities = 6/26 (23%), Positives = 12/26 (46%)

Query: 128 IHSRSADDDMAAILQEEMKKGPFPFV 153
           +  R  +D    +L+E  +KG +   
Sbjct: 210 LQGRHPEDLDYPLLKENEEKGGYTVY 235


>gnl|CDD|48344 cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal
           and catalytic domains.  Family M17 contains zinc- and
           manganese-dependent exopeptidases ( EC  3.4.11.1),
           including leucine aminopeptidase. They catalyze removal
           of amino acids from the N-terminus of a protein and play
           a key role in protein degradation and in the metabolism
           of biologically active peptides. They do not contain
           HEXXH motif (which is used as one of the signature
           patterns to group the peptidase families) in the
           metal-binding site. The two associated zinc ions and the
           active site are entirely enclosed within the C-terminal
           catalytic domain in leucine aminopeptidase. The enzyme
           is a hexamer, with the catalytic domains clustered
           around the three-fold axis, and the two trimers related
           to one another by a two-fold rotation. The N-terminal
           domain is structurally similar to the ADP-ribose binding
           Macro domain. This family includes proteins from
           bacteria, archaea, animals and plants..
          Length = 468

 Score = 26.3 bits (58), Expect = 9.2
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 10/61 (16%)

Query: 185 YDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLME 244
            +   AIA G+ + R LV T +  + P           Y+   AK LAKE  V  E L E
Sbjct: 147 LERGEAIAEGVNLARDLVNTPANDLTP----------TYLAEEAKELAKELGVKVEVLDE 196

Query: 245 E 245
           +
Sbjct: 197 K 197


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,231,295
Number of extensions: 171709
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 36
Length of query: 262
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,275,709
Effective search space: 726870530
Effective search space used: 726870530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.6 bits)