RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780215|ref|YP_003064628.1| hypothetical protein
CLIBASIA_00500 [Candidatus Liberibacter asiaticus str. psy62]
(262 letters)
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 226 bits (576), Expect = 5e-60
Identities = 90/258 (34%), Positives = 143/258 (55%), Gaps = 2/258 (0%)
Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
++DTH HL FD+DR+ VI + N+ ++ + + ++D + L + IFCSV
Sbjct: 13 MVDTHAHLHFHQFDDDRNAVISSFEENNIEFVVNVGVNLEDSKKSLDLSKTSDR-IFCSV 71
Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
G HP A E E ++ L A +VVAIGETGLD + N E QK VF+ IE +
Sbjct: 72 GVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGK 131
Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181
+PLV+H R A + IL+ E VIH FSS + A ++LG + G +T
Sbjct: 132 LNLPLVVHIRDAYSEAYEILRTE-SLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVT 190
Query: 182 FPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYED 241
+PK +ALR + + + ++ +++ETD P++ P +GKRNEP Y+ + +++ V
Sbjct: 191 YPKNEALREVVKRVGLEYIVLETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEAK 250
Query: 242 LMEETTKNALKLFSKISE 259
+ E TT+NA ++F ++ E
Sbjct: 251 VDEATTENARRIFLEVKE 268
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 211 bits (537), Expect = 2e-55
Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 43/295 (14%)
Query: 2 LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51
ID +L P F +D DVI RA + V K + ++D + L Q
Sbjct: 3 FIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGNLQDSKDALHLAQ 62
Query: 52 DYPSSIFCSVGTHPCHAHE----ENEVLVDELVCLA--SHPRVVAIGETGLDRYHNAH-T 104
F +VG HP E ++ + EL+ LA + +VVAIGE GLD
Sbjct: 63 TNGM-FFSTVGCHPTRCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCP 121
Query: 105 IEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLA 164
+ Q F + E S T +P+ +H R++ + I + + V+H F +++ A
Sbjct: 122 KDTQLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRNRDR-CVGGVVHSFDGTKEAA 180
Query: 165 DICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGK------- 217
++L YI F G + + + + IP +++++ETD+P+ S
Sbjct: 181 AALIDLDLYIGFNGCSLKTEAN--LEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTA 238
Query: 218 ---------------RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSKI 257
RNEP +++ + ++ +D +L N +K+F +
Sbjct: 239 FPTKKKWESGHCLKDRNEPCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFPV 293
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
structure initiative; 1.50A {Saccharomyces cerevisiae
YJM789}
Length = 401
Score = 174 bits (441), Expect = 2e-44
Identities = 68/379 (17%), Positives = 110/379 (29%), Gaps = 126/379 (33%)
Query: 2 LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51
D +L P F D ++ RA Q +V + + + I+L
Sbjct: 14 YYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIAESQSAIELVS 73
Query: 52 DY----PSSIFCSVGTHPCHAHEENEVLVDELVC-------------------------- 81
P ++ ++G HPC +E + +
Sbjct: 74 SVKDLSPLKLYHTIGVHPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSF 133
Query: 82 ----------------LASHPRVVAIGETGLDRYH-NAHTIEEQKVVFLRHIEASRITG- 123
+IGE GLD + + E QKV F ++ S +
Sbjct: 134 AQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRFHYSSKEMQKVFFEEQLKISCLNDK 193
Query: 124 ---IPLVIHSRSADDDMAAILQEEM-------------------------KKGPFPFVIH 155
PL +H RSA DD IL+ + V+H
Sbjct: 194 LSSYPLFLHMRSACDDFVQILERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVH 253
Query: 156 CFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQ 215
F+ S L L I + + A+ + IP +R+L+ETD+P+
Sbjct: 254 SFTGSAIDLQKLLNLSPNIFIGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTH 313
Query: 216 GK----------------------------------------RNEPAYVVNTAKALAKEK 235
RNEP + A +++ K
Sbjct: 314 ASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNAEELYMVKGRNEPCNMEQVAIVVSEVK 373
Query: 236 DVSYEDLMEETTKNALKLF 254
DV L++ T K K+F
Sbjct: 374 DVDLATLIDTTWKTTCKIF 392
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural genomics, PSI, protein structure initiative;
2.20A {Staphylococcus aureus subsp}
Length = 265
Score = 164 bits (414), Expect = 2e-41
Identities = 93/255 (36%), Positives = 143/255 (56%), Gaps = 1/255 (0%)
Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
MLIDTH HL +D+D +VI RA +A V +M + +KL +Y ++
Sbjct: 1 MLIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDF-LYGI 59
Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120
+G HP A + E ++ + LA HP+V+ IGE GLD + + + QK VF + I ++
Sbjct: 60 IGWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAK 119
Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180
+P++IH+R A D IL EE + + S + + +L YIS G +
Sbjct: 120 RLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPV 179
Query: 181 TFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240
TF + +A+ + M+R+LVETD+PY+ P +GKRNEPA V A+ +A+ K +SYE
Sbjct: 180 TFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYE 239
Query: 241 DLMEETTKNALKLFS 255
++ E+TTKNA KLF+
Sbjct: 240 EVCEQTTKNAEKLFN 254
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 163 bits (413), Expect = 3e-41
Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 7/260 (2%)
Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
+ D +L F +DR DV+ A A V ++ +++ KL + Y S + +
Sbjct: 4 RMFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSS-CWST 62
Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120
G HP + + + ++ LA+ P VVAIGE GLD N T EEQ+ F+ + +
Sbjct: 63 AGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAA 122
Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180
+P+ +H R A + +L+ + K P V+HCF+ +++ C+ G YI TG +
Sbjct: 123 DLNMPVFMHCRDAHERFMTLLEPWLDKLPG-AVLHCFTGTREEMQACVAHGIYIGITGWV 181
Query: 181 TFPKY-DALRAIARGIPMDRVLVETDSPYIVPVSCQ----GKRNEPAYVVNTAKALAKEK 235
+ LR + IP +++L+ETD+PY++P +RNEPA++ + + +A +
Sbjct: 182 CDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWR 241
Query: 236 DVSYEDLMEETTKNALKLFS 255
L T N LF
Sbjct: 242 GEDAAWLAATTDANVKTLFG 261
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research
center for structural genomics, NYSGXRC, structural
genomics, PSI; 1.90A {Escherichia coli K12} SCOP:
c.1.9.12
Length = 265
Score = 162 bits (410), Expect = 8e-41
Identities = 91/258 (35%), Positives = 141/258 (54%), Gaps = 7/258 (2%)
Query: 1 MLIDTHCHLLLPDFD---EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSI 57
L+D+HCHL D++ +D DV+ +A +V +A+A + ++ + L + + +
Sbjct: 2 FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVV 61
Query: 58 FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIE 117
F + + L VVA+GETGLD Y+ T Q+ F+ HI+
Sbjct: 62 FSCGVHPLNQNDPYDVEDLRRLAA---EEGVVALGETGLDYYYTPETKVRQQESFIHHIQ 118
Query: 118 ASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFT 177
R P+++H+R A D AI E K V+HCF+ ++ A L+LG YISF+
Sbjct: 119 IGRELNKPVIVHTRDARADTLAI-LREEKVTDCGGVLHCFTEDRETAGKLLDLGFYISFS 177
Query: 178 GMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDV 237
G++TF + LR AR +P+DR+LVETDSPY+ PV +GK N+PA V + A+ +A K V
Sbjct: 178 GIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGV 237
Query: 238 SYEDLMEETTKNALKLFS 255
+ E+L + TT N +LF
Sbjct: 238 AVEELAQVTTDNFARLFH 255
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infectious disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 158 bits (400), Expect = 1e-39
Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 46/296 (15%)
Query: 2 LIDTHCHLLLPDF----------DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQ 51
ID +L ++ +ED V+ RA + + +I + + DF I++
Sbjct: 28 FIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCLNDFKKAIEIIN 87
Query: 52 DYP----SSIFCSVGTHPCHAHEENEVLVDE---LVCLASHPRVVAIGETGLDRYH--NA 102
Y + ++G HP +E + + L+C + +VVAIGE GLD +
Sbjct: 88 KYQNLTNIKLVTTIGVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFS 147
Query: 103 HTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQK 162
+ I + +P H R + D+ + +E+ V+HCF +++
Sbjct: 148 DKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQL-NKELGYNGCKGVVHCFDGTEE 206
Query: 163 LADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV---------- 212
+ L G I TG + L + + IP++R+ +ETD PY
Sbjct: 207 EMNQILNEGWDIGVTGN--SLQSIELLNVMKQIPIERLHIETDCPYCGIKKTSAGFKYLK 264
Query: 213 --------------SCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
+RNEP+ +++ A ++ K +S + + + N++ ++
Sbjct: 265 EKDFGVKVEKYQRNKYVQRRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMY 320
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 154 bits (390), Expect = 2e-38
Identities = 71/257 (27%), Positives = 128/257 (49%), Gaps = 5/257 (1%)
Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
IDTHCH P F D + RA QA V K+I A + ++F ++ L ++Y ++ +
Sbjct: 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQP-LYAA 62
Query: 61 VGTHPCHAHEENEVLVDELVCL--ASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEA 118
+G HP + ++V +++L +VVA+GE GLD + + E Q+ + ++
Sbjct: 63 LGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKL 122
Query: 119 SRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTG 178
++ +P+++HSR D +A L+ P V+H FS S + A+ ++LG I G
Sbjct: 123 AKRYDLPVILHSRRTHDKLAMHLKRHDL--PRTGVVHGFSGSLQQAERFVQLGYKIGVGG 180
Query: 179 MITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVS 238
IT+P+ R + +P+ +L+ETD+P + QG+ N P L + +
Sbjct: 181 TITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREP 240
Query: 239 YEDLMEETTKNALKLFS 255
+++ + N LF+
Sbjct: 241 ADEIAQALLNNTYTLFN 257
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 143 bits (362), Expect = 3e-35
Identities = 38/288 (13%), Positives = 80/288 (27%), Gaps = 39/288 (13%)
Query: 2 LIDTHCHLL--LPDFDEDRHDVI----------MRAHQANVLKMIAIAIKV--KDFVPLI 47
H HL L F + + V +I + + ++ ++
Sbjct: 7 YTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFML 66
Query: 48 KLCQDYPSSIFCS----------VGTHPCHAHEENEVLVDELVCLASHP--RVVAIGETG 95
+ ++ ++ E + +VDE+ + I E G
Sbjct: 67 DVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIG 126
Query: 96 LDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMA---AILQEEMKKGPFPF 152
E+ VF+ A TG P+ H+ + + + +
Sbjct: 127 TSEGKITPLEEK---VFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTV 183
Query: 153 VIHCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIARGIPMDRVLVETDS 206
+ ++LG Y+ F + Y L A+ ++RV++ D
Sbjct: 184 GHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDI 243
Query: 207 PYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
+ G + L + S D+ +N + F
Sbjct: 244 TRRSHLKANGGYGYDYLLTTFIPQLR-QSGFSQADVDVMLRENPSQFF 290
>3f4c_A Organophosphorus hydrolase; alpha-beta barrel, amidohydrolase,
binuclear metal enzyme, glycerol-bound; HET: KCX; 2.07A
{Geobacillus stearothermophilus 10} PDB: 3f4d_A*
Length = 332
Score = 143 bits (361), Expect = 3e-35
Identities = 38/307 (12%), Positives = 81/307 (26%), Gaps = 53/307 (17%)
Query: 2 LIDTHCHLLL----------------PDFDEDRHDVIMRAHQANVLKMIAIAIKV--KDF 43
H H L + + + + + ++ ++
Sbjct: 19 KTLIHEHFLFGYPGFQGDVTRGTFREDEALRVAVEAAEKMKRHGIQTVVDPTPNDCGRNP 78
Query: 44 VPLIKLCQDYPSSIFCSVGTHPCHAHEE--------NEVLVDELVCLASHPRVVAIGETG 95
L ++ ++ +I C+ G + D++ + I +TG
Sbjct: 79 AFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTG 138
Query: 96 LD------RYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQ--EEMKK 147
+ E +K+ F A + TG ++ H++ E
Sbjct: 139 IKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGAD 198
Query: 148 GPFPFVIHCFSS-SQKLADICLELGGYISFTGMITFPKYD---------ALRAIARGIPM 197
+ H + L G YI+F L A+ R
Sbjct: 199 PKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYE 258
Query: 198 DRVLVETDS-------PYIVPVSCQGKRNEPAYVVNTAKALA--KEKDVSYEDLMEETTK 248
++++ D+ P+ +P + K + + E L +
Sbjct: 259 KQIMLSHDTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIG 318
Query: 249 NALKLFS 255
N LFS
Sbjct: 319 NPAALFS 325
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 140 bits (354), Expect = 3e-34
Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 13/259 (5%)
Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
LID H HL D D + RA + L ++++ + + L P ++ +
Sbjct: 2 SLIDFHVHL---DLYPDP-VAVARACEERQLTVLSVTTTPAAWRGTLALAAGRPH-VWTA 56
Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASR 120
+G HP E L P +GE GLD + Q+ +HI
Sbjct: 57 LGFHPEVVSERAADLPW---FDRYLPETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRC 113
Query: 121 ITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMI 180
++ S + + E ++H +S S + LG + S
Sbjct: 114 EDHGGRILSIHSRRAESEVLNCLEANPRSGTPILHWYSGSVTELRRAISLGCWFSVGPT- 172
Query: 181 TFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYE 240
+ A+ R +P DRVL ETD P++ G+ P V + + L+K +
Sbjct: 173 -MVRTQKGAALIRSMPRDRVLTETDGPFLEL---DGQAALPWDVKSVVEGLSKIWQIPAS 228
Query: 241 DLMEETTKNALKLFSKISE 259
++ +N +L + E
Sbjct: 229 EVERIVKENVSRLLGTVRE 247
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 136 bits (343), Expect = 5e-33
Identities = 33/299 (11%), Positives = 80/299 (26%), Gaps = 49/299 (16%)
Query: 3 IDTHCHLLL---------PDFDEDRHDV------IMRAHQANVLKMIAIAIKVKDFVP-- 45
H HL + P + + + RA Q V ++ +
Sbjct: 19 TLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRF 78
Query: 46 LIKLCQDYPSSIFCSVGTHP--CHAHEENEVLVDELV---------CLASHPRVVAIGET 94
+ K+ + ++ G + +DE+ + +
Sbjct: 79 MEKVVKATGINLVAGTGIYIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKI 138
Query: 95 GLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI----LQEEMKKGPF 150
D ++ + V A++ T +P++ HS + ++ +E + G
Sbjct: 139 AADEPGI---TKDVEKVIRAAAIANKETKVPIITHSNAHNNTGLEQQRILTEEGVDPGKI 195
Query: 151 PFVIHCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIARGIPMDRVLVET 204
+ + + G +I + + + D++++
Sbjct: 196 LIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLIKDGYSDKIMISH 255
Query: 205 DSPYIVPVSCQGKRNEP--------AYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255
D + +P + K V+ E + +N K FS
Sbjct: 256 DYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFFS 314
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 124 bits (312), Expect = 2e-29
Identities = 44/270 (16%), Positives = 89/270 (32%), Gaps = 40/270 (14%)
Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPL-------------- 46
M D+H H F E +++ + + ++ ++A
Sbjct: 1 MYFDSHLHSEGLGFSE-----LVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFE 55
Query: 47 IKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIE 106
C+ + +VG HP + E ++ VA GE GL+ +
Sbjct: 56 PLRCEAAGVKMHPAVGIHPRCIPPDYE----FVLGYLEEGEWVAFGEIGLELVTD----- 106
Query: 107 EQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEM--KKGPFPFVIHCFSSSQKLA 164
E+ V +E ++ +P +IH+ + A E+ + + +
Sbjct: 107 EEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILESLDFPADLAVIDHVNFETL 166
Query: 165 DICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYV 224
D+ LE +I T + I +R ++ +D+ Y + E V
Sbjct: 167 DMVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLNSDAGY--------RDVEITTV 218
Query: 225 VNTAKALAKEKDVSYEDLMEETTKNALKLF 254
A + + V E++ + +NA K
Sbjct: 219 AEAAVKIE--EAVGREEMEKVARENARKFL 246
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3f4c_A* 3f4d_A*
Length = 330
Score = 121 bits (305), Expect = 1e-28
Identities = 41/307 (13%), Positives = 85/307 (27%), Gaps = 53/307 (17%)
Query: 2 LIDTHCHLL--LPDFDEDRH--------------DVIMRAHQANVLKMI--AIAIKVKDF 43
H H L P F D + + + + ++ ++
Sbjct: 23 KTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNP 82
Query: 44 VPLIKLCQDYPSSIFCSVGTHP--------CHAHEENEVLVDELVCLASHPRVVAIGETG 95
L ++ ++ +I C+ G + D++ + I +TG
Sbjct: 83 AFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTG 142
Query: 96 LDRYHNAHTI------EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA--ILQEEMKK 147
+ E +K+ F A + TG ++ H++ L E
Sbjct: 143 IKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGAD 202
Query: 148 GPFPFVIHCFSSSQK-LADICLELGGYISFTGMITFPKYD---------ALRAIARGIPM 197
+ H ++ L G YI+F L A+ R
Sbjct: 203 PKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRTLLALLRDGYE 262
Query: 198 DRVLVETDS-------PYIVPVSCQGKRNEPAYVVNTAKALA--KEKDVSYEDLMEETTK 248
++++ ++ P+ +P + K + + E L +
Sbjct: 263 KQIMLSHNTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIG 322
Query: 249 NALKLFS 255
N LFS
Sbjct: 323 NPAALFS 329
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM
barrel, binuclear zinc, protein structure initiative II
(PSI II); 1.80A {Rhodobacter sphaeroides 2}
Length = 364
Score = 114 bits (285), Expect = 3e-26
Identities = 38/279 (13%), Positives = 81/279 (29%), Gaps = 33/279 (11%)
Query: 8 HLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIK-LCQDYPSSIFCSVGTHPC 66
++ L D D +V A + + ++ + + + G +
Sbjct: 79 NIALDDLDLAIAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLA 138
Query: 67 HAHEEN----------EVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI 116
+ E + +V E + G G + T E++
Sbjct: 139 SSMPETAARLSADDIADEIVAEALEGTDGTDARI-GLIGEIGVSSDFT-AEEEKSLRGAA 196
Query: 117 EASRITGIPLVIHSRSADDD---MAAILQEEMKKGPFPFVIHCFSSSQKLADI--CLELG 171
A TG+PL++H + +++EE + H S + G
Sbjct: 197 RAQVRTGLPLMVHLPGWFRLAHRVLDLVEEEGADLRHTVLCHMNPSHMDPVYQATLAQRG 256
Query: 172 GYISFTGMITFPKY--------------DALRAIARGIPMDRVLVETDSPYIVPVSCQGK 217
++ F + Y A+ +A +DR+L+ D + ++ G
Sbjct: 257 AFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRILLSHDVFVKMMLTRYGG 316
Query: 218 RNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFSK 256
A+V + + L N ++F
Sbjct: 317 NG-YAFVTKHFLPRLRRHGLDDAALETLMVTNPRRVFDA 354
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 112 bits (282), Expect = 6e-26
Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 23/223 (10%)
Query: 53 YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVF 112
++ F + E E++ E+ + + A G L +A T +++ F
Sbjct: 118 GATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRA-GVIKLASSRDAIT-PYEQLFF 175
Query: 113 LRHIEASRITGIPLVIHSRSADD--DMAAILQEEMKKGPFPFVIHCFSSSQK-LADICLE 169
R TG+P++ H++ A +L + H ++ L
Sbjct: 176 RAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLR 235
Query: 170 LGGYISFTGMITFPKY---------DALRAIARGIPMDRVLVETDSP--YIVPVSCQGKR 218
G I+F + L + DR+L+ DS ++ +
Sbjct: 236 HGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPPAIPEA 295
Query: 219 NEPA-------YVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
PA ++ + + + ++ E + + T N +LF
Sbjct: 296 ALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLF 338
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 112 bits (280), Expect = 8e-26
Identities = 46/310 (14%), Positives = 82/310 (26%), Gaps = 55/310 (17%)
Query: 2 LIDTHCHLLL---------PDFDEDRHDVI-------MRAHQANVLKMIAIAI--KVKDF 43
TH H+ P+F R + RA A V ++ ++ +D
Sbjct: 17 FTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDV 76
Query: 44 VPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGET-----GLDR 98
L ++ + I + G V+EL I +T +
Sbjct: 77 SLLAEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKV 136
Query: 99 YHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI----LQEEMKKGPFPFVI 154
Q++V AS TG+P+ H+ ++ D E +
Sbjct: 137 ATTGKATPFQELVLKAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGH 196
Query: 155 HCFSSSQKLADICLELGGYISFTGMITFPKY--------------------DALRAIARG 194
+ G I + ++A+
Sbjct: 197 SDDTDDLSYLTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKALIDQ 256
Query: 195 IPMDRVLVETDSPYIVP-----VSCQGKRNEPA---YVVNTAKALAKEKDVSYEDLMEET 246
M ++LV D + + R P ++ +EK V E L T
Sbjct: 257 GYMKQILVSNDWTFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGIT 316
Query: 247 TKNALKLFSK 256
N + S
Sbjct: 317 VTNPARFLSP 326
>2qpx_A Predicted metal-dependent hydrolase of the TIM- barrel fold;
YP_805737.1, putative metal-dependent hydrolase,
structural genomics; HET: KCX MSE; 1.40A {Lactobacillus
casei atcc 334}
Length = 376
Score = 79.0 bits (194), Expect = 1e-15
Identities = 37/268 (13%), Positives = 71/268 (26%), Gaps = 31/268 (11%)
Query: 11 LPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHE 70
P D D+ ++ + ++ A +DF+ + + V A
Sbjct: 108 DPILDLDQTAELVGIPVKAIYRLETHA---EDFMLEHDNFAAWWQAFSNDV----KQAKA 160
Query: 71 ENEVLVDELVC----LASHPRVVAIGETGLDRY-HNAHTIEEQKV----VFLRHIEASRI 121
V + L P V G D + H+ K +
Sbjct: 161 HGFVGFKSIAAYRVGLHLEPVNVIEAAAGFDTWKHSGEKRLTSKPLIDYMLYHVAPFIIA 220
Query: 122 TGIPLVIHSRSADDD----------MAAILQEEMKKGPFPFVIHCFSSSQKLADICLELG 171
+PL H D D M L+ KKG ++HC+ ++ +
Sbjct: 221 QDMPLQFHVGYGDADTDMYLGNPLLMRDYLKAFTKKGLKVVLLHCYPYHREAGYLASVFP 280
Query: 172 GYISFTGMITF----PKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNT 227
++ P R+L +D+ + R +V
Sbjct: 281 NLYFDISLLDNLGPSGASRVFNEAVELAPYTRILFASDASTYPEMYGLAARQFKQALVAH 340
Query: 228 AKALAKEKDVSYEDLMEE-TTKNALKLF 254
L + + + + KL+
Sbjct: 341 FNQLPFVDLAQKKAWINAICWQTSAKLY 368
Score = 26.3 bits (57), Expect = 7.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 2 LIDTHCHLLLPDFDEDRHD 20
L+D HCH L+ +R D
Sbjct: 14 LLDHHCHFLIDGKVPNRDD 32
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 53.1 bits (126), Expect = 6e-08
Identities = 37/308 (12%), Positives = 88/308 (28%), Gaps = 54/308 (17%)
Query: 2 LIDTHCHLLL---------PDFDEDRHDVIMRAHQANVLK---------MIAIAIKVKDF 43
+ D H H + DF D ++ + + + + V
Sbjct: 22 ITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKT 81
Query: 44 VPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH 103
+ + ++ ++ S G H +++ + + VA E G+D Y+
Sbjct: 82 LEIANAVKNLGGNVIMSTGFHKAKFYDKYSSWLAVVPTEEIVKMCVAEIEEGMDEYNYNG 141
Query: 104 TIEEQKV---------------------VFLRHIEASRITGIPLVIHSRSADDDMAAILQ 142
+ ++ S +TG P+++H++ +
Sbjct: 142 PVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMALEVAKH 201
Query: 143 EEMKKGPFPFVI----HCFSSSQKLADICLELGGYISFTGMITFPKY------DALRAIA 192
+ + + E G + F G Y + ++ +
Sbjct: 202 LIGFGANPDKIQISHLNKNPDKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLV 261
Query: 193 RGIPMDRVLVETDSPYIVPVSCQGKRNE-----PAYVVNTAKALAKEKDVSYEDLMEETT 247
+ + D+ I+ G AY+ + L K+ VS E + +
Sbjct: 262 DKGLQKHITLSLDAGRILYQRNYGLTKGKQTFGLAYLFDRFLPLLKQVGVSKEAIFDILV 321
Query: 248 KNALKLFS 255
N ++ +
Sbjct: 322 NNPKRVLA 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 42.2 bits (99), Expect = 1e-04
Identities = 41/220 (18%), Positives = 66/220 (30%), Gaps = 99/220 (45%)
Query: 104 TIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPF-PFVI-------- 154
T+ + K + +I A + P S SA L + +G I
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSA-------LFRAVGEGNAQLVAIFGGQGNTD 167
Query: 155 HCFSSSQKLADI-----CLELGGYISFTGMITFPKYDALRAIARGIPMDR---------V 200
F ++L D+ L +G I F+ + L + R +D +
Sbjct: 168 DYF---EELRDLYQTYHVL-VGDLIKFSA-------ETLSELIRT-TLDAEKVFTQGLNI 215
Query: 201 LV-----ET--DSPYI--VPVSC------------------------------------Q 215
L D Y+ +P+SC Q
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 216 GKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALK-LF 254
G +V TA A+A E D S+E + + A+ LF
Sbjct: 276 G-------LV-TAVAIA-ETD-SWESF-FVSVRKAITVLF 304
Score = 40.7 bits (95), Expect = 4e-04
Identities = 53/347 (15%), Positives = 88/347 (25%), Gaps = 162/347 (46%)
Query: 10 LLPDFDEDRHDVIMRAHQANVLKMIAIAIKV--KDFV-------PLIKLCQ--DYPSSIF 58
L+ D + N+L+ + KD++ PLI + Q Y +
Sbjct: 198 LIRT-TLDAEK--VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVT 252
Query: 59 CSV-GTHPC-----------HAH-----------------EENEVLVDELV------CLA 83
+ G P H+ + ++ C
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 84 SHPRV----------VAIGE---------TGLDRYH--------NAHTIEEQKVVFLRHI 116
++P + E + L + N+H + +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG------KQV 366
Query: 117 EAS-----R---ITGIP-----LVIHSR----SADDDMAAILQEEMKKGPF--------- 150
E S + ++G P L + R + D + I PF
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI--------PFSERKLKFSN 418
Query: 151 -------PFVIHCFSSSQKLAD----ICLELGGY-ISFTG-MITFPKYDA-----LRA-- 190
PF H S L I +L +SF I P YD LR
Sbjct: 419 RFLPVASPF--H----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 191 ---IARGIPM---DRV----LVETDSPYIV---P--VSCQG---KRN 219
R + V + + +I+ P S G RN
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Score = 32.2 bits (73), Expect = 0.13
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 9 LLLPDFD-EDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTH 64
+ +P +D D D +R ++ + I I I+L + ++ TH
Sbjct: 455 IQIPVYDTFDGSD--LRVLSGSISERIVDCI--------IRLPVKWETTTQFKA-TH 500
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 39.3 bits (90), Expect = 8e-04
Identities = 32/285 (11%), Positives = 57/285 (20%), Gaps = 56/285 (19%)
Query: 1 MLIDTHCHLLLPD-------------------------FDEDRHDVIMRAHQANVLKMIA 35
++ID H H++LP + DV + N +
Sbjct: 3 LIIDGHTHVILPVEKHIKIMDEAGVDKTILFSTSIHPETAVNLRDVKKEMKKLNDVVNGK 62
Query: 36 IAIKVKDFVP----LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91
+ L + Q YPS VG + +
Sbjct: 63 TNSMIDVRRNSIKELTNVIQAYPSRY---VGFGNVPVGLSENDTNSYIEENIVNN----- 114
Query: 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMA--AILQEEMKKGP 149
L Q + S +G + + + E K P
Sbjct: 115 ---KLVGIGELTPASGQIKSLKPIFKYSMDSGSLPIWIHAFNPLVLQDIKEIAELCKAFP 171
Query: 150 FPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYI 209
VI + + + I + + TD P+
Sbjct: 172 KVPVILGHMGGSNWMTAVELAKEIQNLYLDTSAYFSTFVLKIVINELPLKCIFGTDMPFG 231
Query: 210 VPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
+ K+ N +L
Sbjct: 232 DL--------------QLSIEAIKKMSNDSYVANAVLGDNISRLL 262
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 34.7 bits (78), Expect = 0.025
Identities = 42/277 (15%), Positives = 72/277 (25%), Gaps = 24/277 (8%)
Query: 2 LIDTHCHLLLPDFDEDRHDV--------IMRAHQANVLKMIAIAIKVKDFVPLIKLCQDY 53
ID H HL+ + + A +V+ ++ + L+ +
Sbjct: 64 FIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRAL 123
Query: 54 PSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEE--QKVV 111
+ + + +A RV+ + D A +
Sbjct: 124 NEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIGVKCAISDHRSAAPDVYHLANMAA 183
Query: 112 FLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKG-----PFPFVIHCFSSSQKLADI 166
R V H + + I P ++ + A
Sbjct: 184 ESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALE 243
Query: 167 CLELGGYISFTGMITFP---KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAY 223
GG I T I P RA+ GIP+ RV + +D P
Sbjct: 244 FARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIG 303
Query: 224 VV------NTAKALAKEKDVSYEDLMEETTKNALKLF 254
V T + L K+ D S D + T +
Sbjct: 304 VAGFETLLETVQVLVKDYDFSISDALRPLTSSVAGFL 340
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2,
ACMDS, ACMS, tryptophan-NDA metabolism, quinolinic acid,
QUIN; 2.50A {Lactobacillus plantarum WCFS1} SCOP:
c.1.9.15
Length = 307
Score = 32.8 bits (73), Expect = 0.092
Identities = 25/204 (12%), Positives = 52/204 (25%), Gaps = 19/204 (9%)
Query: 53 YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVF 112
P++ P + L +A HP AI +D +
Sbjct: 123 VPTNSRGLYFGSPVL-ERVYQELDARQAIVALHPNEPAILPKNVDIDLPVPLLG------ 175
Query: 113 LRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGG 172
++ + L H ++ I+ + + ++
Sbjct: 176 -FFMDTTMTFINMLKYHFFEKYPNIKVIIPHAGAFLGIVDDRIAQYAQKVYQVDVYDVMH 234
Query: 173 YISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALA 232
++ F L + + +L +D PY ALA
Sbjct: 235 HVYFDVAGAVLP-RQLPTLMSLAQPEHLLYGSDIPYT----------PLDGSRQLGHALA 283
Query: 233 KEKDVSYEDLMEETTKNALKLFSK 256
++ E NA +L ++
Sbjct: 284 TTDLLTNEQKQAIFYDNAHRLLTE 307
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 32.1 bits (71), Expect = 0.14
Identities = 22/157 (14%), Positives = 39/157 (24%)
Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
ID H H+ F+ D A A + L + +
Sbjct: 53 GIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAG 112
Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
G VL + + +G T + + V L +
Sbjct: 113 GKSAIDYGYHIIVLDPTDSVIEELEVLPDLGITSFKVFMAYRGMNMIDDVTLLKTLDKAV 172
Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFS 158
LV+ D + + + +G + H S
Sbjct: 173 KTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALS 209
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein structure initiative; 1.80A
{Rhodopseudomonas palustris CGA009} SCOP: c.1.9.15
Length = 350
Score = 31.8 bits (70), Expect = 0.15
Identities = 29/243 (11%), Positives = 65/243 (26%), Gaps = 34/243 (13%)
Query: 46 LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTI 105
++ Q +P F P + + + EL VAI + +
Sbjct: 96 CYRVSQLFPD-NFIGAAMLPQSPGVDPKTCIPELEKCVKEYGFVAINLNPDPSGGHWTSP 154
Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHC-----FSSS 160
++ E IP +IH ++ + + C F
Sbjct: 155 PLTDRIWYPIYEKMVELEIPAMIHVSTSCNTCFHTTGAHYLNADTTAFMQCVAGDLFKDF 214
Query: 161 QKLADICLELGGYISFTGMITFPKYD-------------------------ALRAIARGI 195
+L + GG + + + + I
Sbjct: 215 PELKFVIPHGGGAVPYHWGRFRGLAQEMKKPLLEDHVLNNIFFDTCVYHQPGIDLLNTVI 274
Query: 196 PMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLFS 255
P+D VL ++ Y +T + + ++ E+ + NA +++
Sbjct: 275 PVDNVLFASEMIG---AVRGIDPRTGFYYDDTKRYIEASTILTPEEKQQIYEGNARRVYP 331
Query: 256 KIS 258
++
Sbjct: 332 RLD 334
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrolase, structural genomics, PSI-2; HET: KCX;
2.62A {Agrobacterium tumefaciens str}
Length = 417
Score = 31.3 bits (69), Expect = 0.21
Identities = 27/262 (10%), Positives = 64/262 (24%), Gaps = 10/262 (3%)
Query: 2 LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
+D H H+ R L A + + + I
Sbjct: 73 WVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAF 132
Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVV-------FL 113
+ N V + R++ + +
Sbjct: 133 LNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVK 192
Query: 114 RHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGY 173
+ ++I +P+++H +L+ + G S + +
Sbjct: 193 LGKKIAKILKVPMMVHVGEPPALYDEVLE-ILGPGDVVTHCFNGKSGSSIMEDEDLFNLA 251
Query: 174 ISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPV-SCQGKRNEPAYVVNTAKALA 232
G A + + P+ + N P + + T +
Sbjct: 252 ERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKL 311
Query: 233 KEKDVSYEDLMEETTKNALKLF 254
D+ +E+++E T+N +
Sbjct: 312 LSVDMPFENVVEAVTRNPASVI 333
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature dependent structural changes, hydrolase;
HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1
c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A*
1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C*
1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C*
1a5k_C ...
Length = 567
Score = 30.8 bits (69), Expect = 0.35
Identities = 29/209 (13%), Positives = 50/209 (23%), Gaps = 16/209 (7%)
Query: 2 LIDTHCHLLLPDF--DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFC 59
IDTH H + P + V A I S+
Sbjct: 130 GIDTHIHWICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPV 189
Query: 60 SVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS 119
++G + + VA G GL + + + +
Sbjct: 190 NIGLLGKGNVSQ----------PDALREQVAAGVIGLKIHEDWGATPA---AIDCALTVA 236
Query: 120 RITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179
I + +HS + ++ G H + A + + +
Sbjct: 237 DEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIITACAHPNILPS 296
Query: 180 ITFPKYD-ALRAIARGIPMDRVLVETDSP 207
T P L I + M V D
Sbjct: 297 STNPTLPYTLNTIDEHLDMLMVCHHLDPD 325
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
Length = 608
Score = 29.8 bits (66), Expect = 0.59
Identities = 36/264 (13%), Positives = 61/264 (23%), Gaps = 31/264 (11%)
Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQAN----VLKM---IAIAIKVKDFVPLIKLCQDYP 54
LIDTH H+ + A A ++ V K ++ P
Sbjct: 91 LIDTHMHI---ESSMITPAAYAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLP 147
Query: 55 SSIF----CSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKV 110
V + P + L L S P + I E N + E+
Sbjct: 148 LRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAE-----IMNMRGVIERDP 202
Query: 111 VFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLEL 170
++A + H+R + H S + L
Sbjct: 203 RMSGIVQAGLAAEKLVCGHARGLKNAD-----LNAFMAAGVSSDHELVSGEDLMAKLRAG 257
Query: 171 GGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKA 230
G V + TD + + G ++
Sbjct: 258 LTIELRGSHDHLLPEFVAALNTLGHLPQTVTLCTDDVFPDDLLQGGGLDD-------VVR 310
Query: 231 LAKEKDVSYEDLMEETTKNALKLF 254
+ E + T NA +
Sbjct: 311 RLVRYGLKPEWALRAATLNAAQRL 334
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962,
cytoplasm, hydrolase, manganese, metal-binding,
protease, structural genomics; HET: PGE PG4; 1.80A
{Coxiella burnetii}
Length = 482
Score = 29.4 bits (66), Expect = 0.81
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 14/64 (21%)
Query: 184 KYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE--PAYVVNTAKALAKEKDVSYED 241
+ I + R L+ T + + P+ + K +AKE + +
Sbjct: 159 HRKRVTDWLTTIYLIRDLINTPA------------EDMGPSELAQAVKHVAKEFEAKVKI 206
Query: 242 LMEE 245
+ +
Sbjct: 207 IESK 210
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 29.1 bits (64), Expect = 1.0
Identities = 5/126 (3%), Positives = 28/126 (22%)
Query: 32 KMIAIAIKVKDFVPLIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAI 91
+ + + +++P SV H V+ + + +
Sbjct: 41 NIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNG 100
Query: 92 GETGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFP 151
++ + + + + ++ + ++
Sbjct: 101 YYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLK 160
Query: 152 FVIHCF 157
+ +
Sbjct: 161 VIKNLT 166
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 28.6 bits (62), Expect = 1.7
Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 1/103 (0%)
Query: 2 LIDTHCHLLLP-DFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCS 60
+D H H ++ D + + + + ++ + I +
Sbjct: 57 FVDPHIHGVVGADTMNCDFSEMEEFLYSQGVTTFLATTVSTSLEKMKEILRKARDYILEN 116
Query: 61 VGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAH 103
T H E + E S + E L +
Sbjct: 117 PSTSLLGVHLEGPYISKEKKGAHSEKHIRPPSERELSEIDSPA 159
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 28.4 bits (61), Expect = 1.8
Identities = 20/154 (12%), Positives = 41/154 (26%)
Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
ID H H+ LP D +A ++ I++ + Y +
Sbjct: 54 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAE 113
Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
G C V + +VA G + + + +
Sbjct: 114 GNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFKIFLSYKNFFGVDDGEMYQTLRLAK 173
Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIH 155
+V + + + Q+ + +G H
Sbjct: 174 ELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWH 207
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structure initiative;
2.00A {Lactobacillus acidophilus}
Length = 312
Score = 27.8 bits (60), Expect = 2.7
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 12/107 (11%)
Query: 148 GPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALRAIARGIPMDRVLVETDSP 207
PF Y+ + P AL+ +D VL TD+P
Sbjct: 209 AMVPFFSGRIDHILDEKHAQDFKKFYVDTAILGNTP---ALQLAIDYYGIDHVLFGTDAP 265
Query: 208 YIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEETTKNALKLF 254
+ V P+ + +S +D + N L
Sbjct: 266 FAVM---------PSGADQIITQAINDLTISDKDKQKIFHDNYYSLI 303
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 27.1 bits (58), Expect = 3.5
Identities = 24/259 (9%), Positives = 59/259 (22%), Gaps = 9/259 (3%)
Query: 2 LIDTHCHLLLPDFDEDR------HDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPS 55
L+DTH H+ D+ + + + K S
Sbjct: 63 LLDTHVHVSGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLS 122
Query: 56 SIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRH 115
+ + H +L L + E
Sbjct: 123 KSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVGLGTIKNPED---AAPM 179
Query: 116 IEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYIS 175
+E + G + +H+ ++ + + P V+ + +
Sbjct: 180 VEWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVDRIMDE 239
Query: 176 FTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEK 235
+ + + + + G P ++ +A
Sbjct: 240 TDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQIASMS 299
Query: 236 DVSYEDLMEETTKNALKLF 254
D+ E + T N+ ++
Sbjct: 300 DIDPEVAVCMATGNSTAVY 318
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 27.3 bits (59), Expect = 3.6
Identities = 18/175 (10%), Positives = 41/175 (23%), Gaps = 5/175 (2%)
Query: 2 LIDTHCHLLLPDF-----DEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSS 56
++ H H + F D + + + + I ++
Sbjct: 88 WVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTT 147
Query: 57 IFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHI 116
F + +P + E VC A D Y +
Sbjct: 148 TFADMYFYPQQSGEAALAAGIRAVCFAPVLDFPTNYAQNADEYIRKAIECNDRFNNHPMN 207
Query: 117 EASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELG 171
E + + D+ + + P IH + ++++
Sbjct: 208 EQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFN 262
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structure initiative;
HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A*
3igh_X*
Length = 534
Score = 27.1 bits (58), Expect = 3.9
Identities = 25/200 (12%), Positives = 48/200 (24%), Gaps = 6/200 (3%)
Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAIAIKVKDFVPLIKLCQDYPSSIFCSV 61
D+H HL + D+ V M + +VK I +
Sbjct: 97 FFDSHLHLDELGMSLEMVDL------RGVKSMEELVERVKKGRGRIIFGFGWDQDELGRW 150
Query: 62 GTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEASRI 121
T + V + + I L + I
Sbjct: 151 PTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDESTGIVRERALEESRKII 210
Query: 122 TGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMIT 181
L + + A + F+ + + L ++ E ++ ++
Sbjct: 211 NEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVGEKALKALFELEREGRLKMNVFAYLS 270
Query: 182 FPKYDALRAIARGIPMDRVL 201
D L + G R L
Sbjct: 271 PELLDKLEELNLGKFEGRRL 290
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 27.1 bits (58), Expect = 4.0
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 186 DALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245
+L+ + I D+V++ TD P+ P + K + ++ E +
Sbjct: 272 LSLKLLTDVIGKDKVILGTDYPF------------PLGELEPGKLIESMEEFDEETKNKL 319
Query: 246 TTKNALKLF 254
NAL
Sbjct: 320 KAGNALAFL 328
Score = 26.3 bits (56), Expect = 6.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 1 MLIDTHCHLLLPDFDE 16
M ID H H+L ++ +
Sbjct: 1 MKIDIHSHILPKEWPD 16
>2hc9_A Leucine aminopeptidase 1; zinc, carbonate, structural genomics,
PSI, protein structure initiative; 1.85A {Caenorhabditis
elegans} PDB: 2hb6_A
Length = 491
Score = 26.9 bits (59), Expect = 4.8
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 14/61 (22%)
Query: 187 ALRAIARGIPMDRVLVETDSPYIVPVSCQGKRNE--PAYVVNTAKALAKEKDVSYEDLME 244
L ++ + L++T + N +V+ A + +
Sbjct: 162 FLTDLSESVRETARLIDTPA------------NILTTDALVDEAVKVGNATGSKITVIRG 209
Query: 245 E 245
E
Sbjct: 210 E 210
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.9 bits (58), Expect = 4.8
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 7/23 (30%)
Query: 23 MRAHQANVLKMIA------IAIK 39
++ QA+ LK+ A +AIK
Sbjct: 22 LKKLQAS-LKLYADDSAPALAIK 43
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genomics,
JCSG, PSI, protein structure initiative; 2.00A
{Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 26.7 bits (58), Expect = 5.1
Identities = 8/106 (7%), Positives = 19/106 (17%), Gaps = 6/106 (5%)
Query: 35 AIAIKVKDFVPLIK-LCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGE 93
I ++ ++ + +++
Sbjct: 153 TILLRGGSDALNSNKAIVSAIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVI 212
Query: 94 TGLDRYHNAHTIEEQKVVFLRHIEASRITGIPLVIHSRSADDDMAA 139
+ + V L G + SAD A
Sbjct: 213 PRGGYGLISFVRDNATVPVLETGV-----GNCHIFVDESADLKKAV 253
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 26.8 bits (57), Expect = 5.4
Identities = 14/160 (8%), Positives = 33/160 (20%), Gaps = 4/160 (2%)
Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKM----IAIAIKVKDFVPLIKLCQDYPSSI 57
ID H H L ++ V+ A +
Sbjct: 62 FIDVHGHDDLMFVEKPDLRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLF 121
Query: 58 FCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIE 117
+ + V LV A+ +++ L
Sbjct: 122 ADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGA 181
Query: 118 ASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCF 157
TG+ + + ++ + + ++
Sbjct: 182 VGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRN 221
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putative; TIM-barrel
protein., structural genomics, PSI, protein structure
initiative; 2.61A {Pseudomonas putida KT2440} SCOP:
c.1.9.15
Length = 288
Score = 26.6 bits (57), Expect = 5.5
Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 19/225 (8%)
Query: 3 IDTHCHL------------LLPDFDEDRHDVIMRAHQANVLKMIAI--AIKVKDFVPLIK 48
ID+H H+ P++D D + + + + + D L+
Sbjct: 15 IDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLS 74
Query: 49 LCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYH--NAHTIE 106
Q P + V + V + I
Sbjct: 75 ALQTVPGQLRGVVMLERDVEQATLAEMARLGVRGVRLNLMGQDMPDLTGAQWRPLLERIG 134
Query: 107 EQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADI 166
EQ H + + I + + D + + + ++G + +
Sbjct: 135 EQGWHVELHRQVADIPVLVRALQPYGLDIVIDHFGRPDARRGLGQPGFAELLTLSGRGKV 194
Query: 167 CLELGGYISFTGMITFPKYDALRAIARGIPM---DRVLVETDSPY 208
+++ G G A +A+ +R++ +D P+
Sbjct: 195 WVKVSGIYRLQGSPEENLAFARQALCALEAHYGAERLMWGSDWPH 239
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TIM-barrel protein; HET: GOL;
1.76A {Bordetella bronchiseptica}
Length = 291
Score = 26.4 bits (57), Expect = 6.1
Identities = 20/173 (11%), Positives = 41/173 (23%), Gaps = 12/173 (6%)
Query: 46 LIKLCQDYPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTI 105
+ + + YP E + L R+V + +
Sbjct: 82 VAAVAKAYPDKFHPVGSIEA---ATRKEAMAQMQEILDLGIRIVNLEPGVWATPMHVD-- 136
Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAI--LQEEMKKGPFPFVIHCFSSSQKL 163
+ + E + I I + + D + + P V+ + +
Sbjct: 137 DRRLYPLYAFCEDNGIPVIMMTGGNAGPDITYTNPEHIDRVLGDFPDLTVVSSHGNWPWV 196
Query: 164 ADICLELGGY-----ISFTGMITFPKYDALRAIARGIPMDRVLVETDSPYIVP 211
+I + P + A DR+L T P
Sbjct: 197 QEIIHVAFRRPNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGTAYPMCPL 249
>1e9y_B Urease beta subunit; hydrolase, dodecamer, acetohydroxamic acid;
HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.92.1.1
c.1.9.2 PDB: 1e9z_B*
Length = 569
Score = 26.2 bits (57), Expect = 6.8
Identities = 23/199 (11%), Positives = 48/199 (24%), Gaps = 16/199 (8%)
Query: 2 LIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIA--IAIKVKDFVPLIKLCQDYPSSIFC 59
IDTH H + P + A + +K
Sbjct: 132 GIDTHIHFISPQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSM 191
Query: 60 SVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHTIEEQKVVFLRHIEAS 119
++G + L D++ E G + ++ +
Sbjct: 192 NLGFLAKGNASNDASLADQI-------------EAGAIGFKIHEDWGTTPSAINHALDVA 238
Query: 120 RITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGM 179
+ + IH+ + ++ G H + A +++ G +
Sbjct: 239 DKYDVQVAIHTDTLNEAGCVEDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPA 298
Query: 180 ITFPKYDALR-AIARGIPM 197
T P A + M
Sbjct: 299 STNPTIPFTVNTEAEHMDM 317
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
zinc, metallo- enzyme, structure 2 function project,
S2F, unknown function; 1.57A {Escherichia coli} SCOP:
c.6.3.1 PDB: 1m68_A 1pb0_A
Length = 245
Score = 26.5 bits (57), Expect = 6.8
Identities = 22/226 (9%), Positives = 56/226 (24%), Gaps = 22/226 (9%)
Query: 1 MLIDTHCHLLLPDFDEDRHDVIMRAHQANVLKMIAI--------AIKVKDFVPLIKLCQD 52
+D H H + + + +K+ AI +++
Sbjct: 2 YPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWHFINMRIWPR 61
Query: 53 YPSSIFCSVGTHPCHAHEENEVLVDELVCLASHPRVVAIGETGLDRYHNAHT-------I 105
+ G + + E+ + + + E + A I
Sbjct: 62 VVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHEPVFAPHDKATNTQAMIATI 121
Query: 106 EEQKVVFLRHIEASRITGIPLVIHSRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLAD 165
V + H + + +A +A E + +++A
Sbjct: 122 ASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVAL---EINNSSFLHSRKGSEDNCREVAA 178
Query: 166 ICLELGGYISFTGMITFPK----YDALRAIARGIPMDRVLVETDSP 207
+ GG+++ ++ I + + SP
Sbjct: 179 AVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSP 224
>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 2.85A {Thermotoga maritima} SCOP:
c.1.9.8
Length = 463
Score = 26.0 bits (57), Expect = 8.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 2 LIDTHCHLLLPDFDEDRH 19
++D H HL D E++
Sbjct: 38 IVDPHNHLDAKDIVENKP 55
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A
{Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A*
Length = 528
Score = 26.1 bits (57), Expect = 8.3
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 189 RAIARGIPMDRVLVETDSPYIVPVSCQGKRNEPAYVVNTAKALAKEKDVSYEDLMEE 245
R G L+ S Y P + N A LA++ ++ Y+ L +
Sbjct: 202 RVYYFGTYYASQLIAAPSNYCNP----------VSLSNAAVELAQKLNLEYKILGVK 248
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
elongation complex, transcription/DNA/RNA complex; 2.10A
{Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A
1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A*
3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Length = 883
Score = 25.9 bits (56), Expect = 9.1
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 60 SVGTHPCHAHEENEVLVDELVCL-ASHPRVVAIGETGLDRYHNAHTIEEQKV 110
S GT P A + + + +V S + + D+ H + + +
Sbjct: 813 SFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPAL 864
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.137 0.409
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,318,508
Number of extensions: 107546
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 72
Length of query: 262
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 171
Effective length of database: 3,487,026
Effective search space: 596281446
Effective search space used: 596281446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.1 bits)