HHsearch alignment for GI: 254780217 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.00 E-value=1.1e-08 Score=89.61 Aligned_cols=195 Identities=16% Similarity=0.112 Sum_probs=114.5
Q ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf 56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r 10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL 89 (347)
Q Consensus 10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h 89 (347)
T Consensus 177 klDpvIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~~g~VP~~L----~~~--------------- 236 (823)
T CHL00095 177 NLDPVIGRDKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIANRDVPDIL----EDK--------------- 236 (823)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHH----CCC---------------
T ss_conf 99987595699999999997732488-5023799987999999999976088998687----599---------------
Q ss_pred CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--------CHHHHHHHHHHHHHCCCCC
Q ss_conf 75453001000101342123237887554431022211112103532205542--------4000145677766303434
Q gi|254780217|r 90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM--------NRNAANALLKSLEEPPQKV 161 (347)
Q Consensus 90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l--------n~~AaNALLK~LEEPp~~t 161 (347)
T Consensus 237 -~i~sLDl~~L~AGtkyRGeF-EeRlk~il~ei~~----~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLar--Gel 308 (823)
T CHL00095 237 -LVLTLDIGLLLAGTKYRGEF-EERIKKIMDEIKK----ANNIILVIDEIHTLIGAGAAEGAIDAANILKPALAR--GKL 308 (823)
T ss_pred -CEEEEEHHHHHHCCCCCHHH-HHHHHHHHHHHHH----CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHC--CCC
T ss_conf -36884288775334222679-9999999999985----798699973516532889766643178876578648--986
Q ss_pred CEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------CHH
Q ss_conf 1676504433--57---302520369886479998999999997--------2788896789999997598------978
Q gi|254780217|r 162 LFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------SVA 222 (347)
Q Consensus 162 ~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s~~ 222 (347)
T Consensus 309 ~~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPD 388 (823)
T CHL00095 309 QCIGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPD 388 (823)
T ss_pred EEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 69970788999998530588996268410289987999999999999998750885047899999998776403777821
Q ss_pred HHHHHHCCCH
Q ss_conf 9998814577
Q gi|254780217|r 223 RAIKILHYDC 232 (347)
Q Consensus 223 ~A~~ll~~~~ 232 (347)
T Consensus 389 KAIDllDeA~ 398 (823)
T CHL00095 389 KAIDLLDEAG 398 (823)
T ss_pred HHHHHHHHHH
T ss_conf 7888899998