HHsearch alignment for GI: 254780217 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.00  E-value=1.1e-08  Score=89.61  Aligned_cols=195  Identities=16%  Similarity=0.112  Sum_probs=114.5

Q ss_pred             CHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHCCCC
Q ss_conf             56561092999999999998288981663117989888999999999981779988643121012678867999967898
Q gi|254780217|r   10 YNQRLFGHEDIEKFLSQYYCSGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPCSPFVKQMASHAL   89 (347)
Q Consensus        10 ~~~~i~G~~~~~~~L~~~~~~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~~~~~~~i~~~~h   89 (347)
T Consensus       177 klDpvIGRd~EI~r~i~IL~RR~KNN-piLvGepGVGKTAIvEGLA~rI~~g~VP~~L----~~~---------------  236 (823)
T CHL00095        177 NLDPVIGRDKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIANRDVPDIL----EDK---------------  236 (823)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCC-CEEECCCCCCHHHHHHHHHHHHHCCCCCHHH----CCC---------------
T ss_conf             99987595699999999997732488-5023799987999999999976088998687----599---------------


Q ss_pred             CCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC--------CHHHHHHHHHHHHHCCCCC
Q ss_conf             75453001000101342123237887554431022211112103532205542--------4000145677766303434
Q gi|254780217|r   90 HDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGM--------NRNAANALLKSLEEPPQKV  161 (347)
Q Consensus        90 pd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~l--------n~~AaNALLK~LEEPp~~t  161 (347)
T Consensus       237 -~i~sLDl~~L~AGtkyRGeF-EeRlk~il~ei~~----~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLar--Gel  308 (823)
T CHL00095        237 -LVLTLDIGLLLAGTKYRGEF-EERIKKIMDEIKK----ANNIILVIDEIHTLIGAGAAEGAIDAANILKPALAR--GKL  308 (823)
T ss_pred             -CEEEEEHHHHHHCCCCCHHH-HHHHHHHHHHHHH----CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHC--CCC
T ss_conf             -36884288775334222679-9999999999985----798699973516532889766643178876578648--986


Q ss_pred             CEEEEECCCC--CC---CHHHHCEEEEEECCCCCHHHHHHHHHH--------HCCCCCHHHHHHHHHHCCC------CHH
Q ss_conf             1676504433--57---302520369886479998999999997--------2788896789999997598------978
Q gi|254780217|r  162 LFILISHASP--TI---LSTIRSRCLSIKFNSLSENNLYKALEQ--------LKIMGWDSKRDFVKIAAYG------SVA  222 (347)
Q Consensus       162 ~fiLit~~~~--~i---l~TI~SRc~~i~f~~l~~~~~~~~L~~--------~~~~~~~~~~~~~~~~s~G------s~~  222 (347)
T Consensus       309 ~~IGATT~~EYrk~iEkD~AL~RRFq~V~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LPD  388 (823)
T CHL00095        309 QCIGATTLEEYRKHIEKDPALERRFQPVYVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLPD  388 (823)
T ss_pred             EEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             69970788999998530588996268410289987999999999999998750885047899999998776403777821


Q ss_pred             HHHHHHCCCH
Q ss_conf             9998814577
Q gi|254780217|r  223 RAIKILHYDC  232 (347)
Q Consensus       223 ~A~~ll~~~~  232 (347)
T Consensus       389 KAIDllDeA~  398 (823)
T CHL00095        389 KAIDLLDEAG  398 (823)
T ss_pred             HHHHHHHHHH
T ss_conf             7888899998