HHsearch alignment for GI: 254780217 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.41  E-value=8.4e-06  Score=66.36  Aligned_cols=134  Identities=16%  Similarity=0.258  Sum_probs=91.4

Q ss_pred             HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHH
Q ss_conf             561092999999999998288--------9816631179898889999999999817799886431210126-7886799
Q gi|254780217|r   12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVK   82 (347)
Q Consensus        12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~   82 (347)
T Consensus       509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~--~liR~DMSEy~E~hsvsr  586 (823)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEE--AMIRLDMSEYMEKHTVSK  586 (823)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC--CEEEECCCCCCCCCCHHH
T ss_conf             784076999999999999997089989997468998789988779999999999747820--258853510155420767


Q ss_pred             HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf             9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r   83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP----  158 (347)
Q Consensus        83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp----  158 (347)
T Consensus       587 LI--GaPPGYVGy~----e-GG-----~LTeaV-------rr~P----ysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~  643 (823)
T CHL00095        587 LI--GSPPGYVGYN----E-GG-----QLTEAV-------RKKP----YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDS  643 (823)
T ss_pred             HC--CCCCCCCCCC----C-CC-----CHHHHH-------HCCC----CEEEEECHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf             45--8998766778----7-88-----201988-------7199----86998621311388999988765168843489


Q ss_pred             -------CCCCEEEEECCC
Q ss_conf             -------434167650443
Q gi|254780217|r  159 -------QKVLFILISHAS  170 (347)
Q Consensus       159 -------~~t~fiLit~~~  170 (347)
T Consensus       644 ~Gr~vdF~NtIIImTSNlG  662 (823)
T CHL00095        644 KGRTIDFKNTLIIMTSNLG  662 (823)
T ss_pred             CCCEEECEEEEEEECCCCC
T ss_conf             9998843103999716505