HHsearch alignment for GI: 254780217 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.41 E-value=8.4e-06 Score=66.36 Aligned_cols=134 Identities=16% Similarity=0.258 Sum_probs=91.4
Q ss_pred HHHCCHHHHHHHHHHHHHCCC--------CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CCCHHHH
Q ss_conf 561092999999999998288--------9816631179898889999999999817799886431210126-7886799
Q gi|254780217|r 12 QRLFGHEDIEKFLSQYYCSGR--------MHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPD-PCSPFVK 82 (347)
Q Consensus 12 ~~i~G~~~~~~~L~~~~~~~~--------l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~-~~~~~~~ 82 (347)
T Consensus 509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~--~liR~DMSEy~E~hsvsr 586 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEE--AMIRLDMSEYMEKHTVSK 586 (823)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC--CEEEECCCCCCCCCCHHH
T ss_conf 784076999999999999997089989997468998789988779999999999747820--258853510155420767
Q ss_pred HHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC----
Q ss_conf 9967898754530010001013421232378875544310222111121035322055424000145677766303----
Q gi|254780217|r 83 QMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNRNAANALLKSLEEPP---- 158 (347)
Q Consensus 83 ~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~~AaNALLK~LEEPp---- 158 (347)
T Consensus 587 LI--GaPPGYVGy~----e-GG-----~LTeaV-------rr~P----ysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~ 643 (823)
T CHL00095 587 LI--GSPPGYVGYN----E-GG-----QLTEAV-------RKKP----YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDS 643 (823)
T ss_pred HC--CCCCCCCCCC----C-CC-----CHHHHH-------HCCC----CEEEEECHHHHCCHHHHHHHHHHCCCCCCCCC
T ss_conf 45--8998766778----7-88-----201988-------7199----86998621311388999988765168843489
Q ss_pred -------CCCCEEEEECCC
Q ss_conf -------434167650443
Q gi|254780217|r 159 -------QKVLFILISHAS 170 (347)
Q Consensus 159 -------~~t~fiLit~~~ 170 (347)
T Consensus 644 ~Gr~vdF~NtIIImTSNlG 662 (823)
T CHL00095 644 KGRTIDFKNTLIIMTSNLG 662 (823)
T ss_pred CCCEEECEEEEEEECCCCC
T ss_conf 9998843103999716505