HHsearch alignment for GI: 254780217 and conserved domain: COG0465
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones].
Probab=97.89 E-value=0.00043 Score=52.62 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=103.8
Q ss_pred CCHHHHCCHHHHHHHHHHHHH-----------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCC
Q ss_conf 756561092999999999998-----------288981663117989888999999999981779988643121012678
Q gi|254780217|r 9 VYNQRLFGHEDIEKFLSQYYC-----------SGRMHHALLFEGEQGIGKATLGFRYAGHVLQNPDFSKAPVRMCNPDPC 77 (347)
Q Consensus 9 ~~~~~i~G~~~~~~~L~~~~~-----------~~~l~ha~Lf~Gp~GiGK~~~A~~~A~~llc~~~~~~~~~~~~~~~~~ 77 (347)
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE-------A~VPFf~i----- 214 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE-------AGVPFFSI----- 214 (596)
T ss_pred CCHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCC-------CCCCCEEC-----
T ss_conf 675664186799999999999863855667523534565268559998727899998454-------68983530-----
Q ss_pred CHHHHHHHCCCCCCEEEECCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCH-------------
Q ss_conf 8679999678987545300100010134212323788755443102221111210353220554240-------------
Q gi|254780217|r 78 SPFVKQMASHALHDFLYLSYSLNPKTGKWRTVITVDEIRRIRYFLSLTANTGYWRVIMIDPVDGMNR------------- 144 (347)
Q Consensus 78 ~~~~~~i~~~~hpd~~~i~~~~~~k~~~~~~~I~vd~IR~l~~~~~~~~~~~~~Ki~IId~ad~ln~------------- 144 (347)
T Consensus 215 ----------SGS~FVemfVG-----------vGAsRVRdLF~qAkk~----aP~IIFIDEiDAvGr~Rg~g~Gggnder 269 (596)
T COG0465 215 ----------SGSDFVEMFVG-----------VGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDER 269 (596)
T ss_pred ----------CCHHHHHHHCC-----------CCCHHHHHHHHHHHCC----CCCEEEEEHHHHCCCCCCCCCCCCCHHH
T ss_conf ----------34446443147-----------8838889999985515----9966987634331454577889980699
Q ss_pred -HHHHHHHHHHHHCCCCC-CEEEEECCCCCCCHHHHCEE----EEEECCCCCHHHHHHHHHH---HCCCCCHHHHHHHHH
Q ss_conf -00145677766303434-16765044335730252036----9886479998999999997---278889678999999
Q gi|254780217|r 145 -NAANALLKSLEEPPQKV-LFILISHASPTILSTIRSRC----LSIKFNSLSENNLYKALEQ---LKIMGWDSKRDFVKI 215 (347)
Q Consensus 145 -~AaNALLK~LEEPp~~t-~fiLit~~~~~il~TI~SRc----~~i~f~~l~~~~~~~~L~~---~~~~~~~~~~~~~~~ 215 (347)
T Consensus 270 EQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V~l~~iAr 349 (596)
T COG0465 270 EQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIAR 349 (596)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99998888520157888754885267874333176528877662554478515657888788641577776678889864
Q ss_pred HCCCCHHH-HHHHHC
Q ss_conf 75989789-998814
Q gi|254780217|r 216 AAYGSVAR-AIKILH 229 (347)
Q Consensus 216 ~s~Gs~~~-A~~ll~ 229 (347)
T Consensus 350 ~tpGfsGAdL~nl~N 364 (596)
T COG0465 350 GTPGFSGADLANLLN 364 (596)
T ss_pred HCCCCCCCHHHHHHH
T ss_conf 377856306765566